Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi05g0886 | ATGGAAGGGACAAGCATGGAAGTCCCAGACTCTCCCAACGAATCCGACCAAAAACCAAAGTTCACTCTTCCTGTGGATTCTGAACACAAGGCCACTGAGTTTAGGTTATTCTCAGTAGCCAAGCCTCACATGCGTGCATTCCATCTCTCTTGGATCTCATTCTTCTCATGCTTTGTATCAAGCTTCGCCGCACCACCCCTCGTCCCCATCATCCGCGACAGCCTCAACCTGACAGCCACCGACATCGGAAACGCCGGTGTCGCCTCAGTTTCCGGAGCAGTCTTCGCTCGAATAGCCATGGGGACAGCCTGCGACTTATTCGGACCCCGTCTTGCCTCTGCCTCCCTCATCCTCCTCACTGCACCAGTAGTCTTCTTCACCTCCATCATCTCTTCCCCCACCTCCTTCCTCCTTGTACGCTTCTTCACTGGCTTCTCCTTAGCCACCTTCGTCTCAACCCAATTCTGGATGAGCTCTATGTTTTCTCCTCCTGTCGTTGGCTCAGCCAATGGCTTTGCAGCTGGGTGGGGAAACCTCGGAGGAGGAGCCACCCAGCTCATCATGCCTCTTGTCTTTGACCTTATTGTTCACATTGGTGCTGTGCAATTCACAGCCTGGAGGATTGCCTTCTTTGTTCCTGCACTATTTCAAATGCTAACAGCGTTTGCTATATTGATATTTGGGCAAGACATGCCAGATGGGAACTTCTATGGATTGAAGAAATCTGGGGAGAAGCCAAAAGATGAGTTCTCAAAGGTTCTATATCATGGGGCTACGAATTACAGAGGGTGGATTCTGGCATTGACTTATGGGTATTGCTTTGGGGTGGAGCTTACAGTGGACAATATAATAGCTGAGTATTTCTTTGATAGGTTTGATCTGAAACTTCGCACAGCGGGGATAATTGCTGCGAGCTTTGGGCTGGCTAATGTGGTTTCTCGACCTGCAGGAGGGTATATATCAGATGCTATGGCGAAGAGGTTTGGAATGAGGGGTAGGCTATGGGCTTTATGGTTGTGCCAAACCTTGGGAGGGGTTTTCTGCATAACACTTGGCGTTGTGGGGTCTTTAAGCGCATCCATCATTGTAATGATCATATTCTCAGTGTTTGTTCAAGCTGCATGCGGACTTACGTTTGGAGTGGTTCCTTTTGTATCGAGAAGGTCATTGGGGGCGATATCTGGAATGACAGGAGGTGGAGGGAATGTGGGTGCAGTTTTGACACAACTAATATTCTTCAAAGGATCCAAATTTTCTAAAGAAAGAGGGATAACCCTAATGGGTGTGATGATCGTCACCTGCACCCTCCCAATATGTCTAATCCACTTTCCACAATGGGGTGGCATGTTTTCTGGGCCATCATCTAAAAAGGTCACAGAAGAAGACTATTACCTTTCTGAGTGGAACTCAAAGGAGCAGGAGAAAGGCTCCCATCATGCAAGCTTGAAATTTGCTGATAACAGCAGAAAAGAAAGAGGCAGGACACTGAAATCTTCAACGAAGCCTTATGGTCATGAAGCCGCACTAACCCATGTCTAA | 1539 | 0.4808 | MEGTSMEVPDSPNESDQKPKFTLPVDSEHKATEFRLFSVAKPHMRAFHLSWISFFSCFVSSFAAPPLVPIIRDSLNLTATDIGNAGVASVSGAVFARIAMGTACDLFGPRLASASLILLTAPVVFFTSIISSPTSFLLVRFFTGFSLATFVSTQFWMSSMFSPPVVGSANGFAAGWGNLGGGATQLIMPLVFDLIVHIGAVQFTAWRIAFFVPALFQMLTAFAILIFGQDMPDGNFYGLKKSGEKPKDEFSKVLYHGATNYRGWILALTYGYCFGVELTVDNIIAEYFFDRFDLKLRTAGIIAASFGLANVVSRPAGGYISDAMAKRFGMRGRLWALWLCQTLGGVFCITLGVVGSLSASIIVMIIFSVFVQAACGLTFGVVPFVSRRSLGAISGMTGGGGNVGAVLTQLIFFKGSKFSKERGITLMGVMIVTCTLPICLIHFPQWGGMFSGPSSKKVTEEDYYLSEWNSKEQEKGSHHASLKFADNSRKERGRTLKSSTKPYGHEAALTHV | 512 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi05g0886 | 512 | MobiDBLite | consensus disorder prediction | 476 | 500 | - | - | |
| Glsi05g0886 | 512 | MobiDBLite | consensus disorder prediction | 476 | 499 | - | - | |
| Glsi05g0886 | 512 | FunFam | High affinity nitrate transporter 2.5 | 39 | 235 | - | - | |
| Glsi05g0886 | 512 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Glsi05g0886 | 512 | PANTHER | HIGH-AFFINITY NITRATE TRANSPORTER 2.3 | 12 | 495 | IPR044772 | GO:0015112 | |
| Glsi05g0886 | 512 | SUPERFAMILY | MFS general substrate transporter | 32 | 440 | IPR036259 | - | |
| Glsi05g0886 | 512 | ProSiteProfiles | Major facilitator superfamily (MFS) profile. | 46 | 446 | IPR020846 | GO:0022857 | |
| Glsi05g0886 | 512 | CDD | MFS_NRT2_like | 47 | 440 | IPR044772 | GO:0015112 | |
| Glsi05g0886 | 512 | Gene3D | MFS general substrate transporter like domains | 248 | 445 | IPR036259 | - | |
| Glsi05g0886 | 512 | FunFam | Nitrate transporter 2.1 | 247 | 448 | - | - | |
| Glsi05g0886 | 512 | Gene3D | MFS general substrate transporter like domains | 38 | 235 | IPR036259 | - | |
| Glsi05g0886 | 512 | Pfam | Major Facilitator Superfamily | 51 | 407 | IPR011701 | GO:0022857|GO:0055085 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi05g0886 | Glsi-ChrGlsi05 | 59109830 | 59113367 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi05g0886 | 20 | 502 | Inorganic Solute Cotransporters | AT1G12940 | 74.741 | 0.0 | 758 |