Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0884 ATGGAGAATTATTTAATTTCGGCTCAAGCAGTAGTGGCGGAGCCCCAAGATAGGCAACGCAACGTTGTGCTTGTGATCGTGGTTATGGAGGAAATGTACGGACTGCCCTCCGCGGCGGAGTACTCAGACAACGCTTTGATGACGCAGGAGAATCTGATCTTTCCGGCCGACTACCAGAGCTTCTTCATGTCTTCCGGCGGTTTCCGTGATCGGATTCCGATGTTCGGATCCTACGAGATGCTCTCCGCTGCCTCCGCGATTACCGAAGCCGCTGAAGCCTCCGTCGTCACTCCCGAAATTCGGCCTCAAGAGGATTCCTCCTCCGTCATCAAAGCCAAAATTGCCTCTCATCCTCACTATCCTCGTCTTCTTCAAGCTTACATCGACTGCCAGAAGGTAGGAGCGCCGCCGGAGATAGCGAGTTTGTTAGAGGAAATCCGGCGAGAAAATGACCCTTGTAAGAGGAACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTTATGGAAACCTACTGCGACATGCTGTTGAAGTATAAATCTGATCTTTCGCGGCCTTTTGATGAAGCAACCTCGTTCCTTAACAACATCGAAACGCAGCTCAGCAACCTCTCCACTGGTGCTTCCGTTCCAAGCCTTTCCGATGGGGGTGTGTCATCGGAAGAAGATTTTAGCACTGGAGATGGTGACACTCAAGATGCTCAAGTGAGGGTTGAAGATCAAGAACTTAAGGATACGCTTTTACGTAAGTTTGGGAGTCGCATTAGTACTTTGAAATTGGAGTTCTCAAAGAAGAAGAAGAAGGGTAAGCTACCGAAAGAAGCCAGGCAATCTCTGCTTGAGTGGTGGAGTGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATAGCACTGGCTAAGTCAACGGGTCTAGACCAGAAGCAAATTAACAATTGGTTTATTAACCAGAGAAAGCGCCACTGGAAACCATCTGAGAATTACATGCAGTTTTCTGCTATGGATAATCTGACTGGACGGTTCTATACTGATGAATGA 1050 0.4867 MENYLISAQAVVAEPQDRQRNVVLVIVVMEEMYGLPSAAEYSDNALMTQENLIFPADYQSFFMSSGGFRDRIPMFGSYEMLSAASAITEAAEASVVTPEIRPQEDSSSVIKAKIASHPHYPRLLQAYIDCQKVGAPPEIASLLEEIRRENDPCKRNVVSTCFGADPELDEFMETYCDMLLKYKSDLSRPFDEATSFLNNIETQLSNLSTGASVPSLSDGGVSSEEDFSTGDGDTQDAQVRVEDQELKDTLLRKFGSRISTLKLEFSKKKKKGKLPKEARQSLLEWWSVHYKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENYMQFSAMDNLTGRFYTDE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0884 349 SUPERFAMILY Homeodomain-like 266 337 IPR009057 -
Glsi05g0884 349 SMART HOX_1 267 332 IPR001356 GO:0003677
Glsi05g0884 349 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 334 - -
Glsi05g0884 349 MobiDBLite consensus disorder prediction 209 235 - -
Glsi05g0884 349 Pfam ELK domain 245 266 IPR005539 GO:0003677
Glsi05g0884 349 SMART KNOX1_2 108 152 IPR005540 GO:0003677|GO:0005634
Glsi05g0884 349 Pfam KNOX1 domain 110 151 IPR005540 GO:0003677|GO:0005634
Glsi05g0884 349 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981|GO:0006355
Glsi05g0884 349 Pfam KNOX2 domain 162 207 IPR005541 GO:0003677|GO:0005634
Glsi05g0884 349 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677
Glsi05g0884 349 SMART KNOX2_2 158 209 IPR005541 GO:0003677|GO:0005634
Glsi05g0884 349 MobiDBLite consensus disorder prediction 209 236 - -
Glsi05g0884 349 SMART ELK_2 245 266 IPR005539 GO:0003677
Glsi05g0884 349 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677|GO:0006355
Glsi05g0884 349 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677
Glsi05g0884 349 CDD homeodomain 291 329 IPR001356 GO:0003677
Glsi05g0884 349 Gene3D - 264 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0884 Glsi-ChrGlsi05 59089000 59100775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0884 29 349 Homeobox Transcription Factor Family AT1G23380 65.964 6.32e-143 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi05g0884 KNOX2 2.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0884 05 59089000 59100775 Glsi09g1030 09 7212826 7220186 CCT
Glsi05g0884 05 59089000 59100775 Glsi05g0884 05 59089000 59100775 ECH