Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0882 ATGGCAAACATTAGTTCGATTTTCTGGCTATTGGGTTTCCTGCTTCTGCCATTGATGGAGATTTCTTCTGGCGCTCTTTCCCCTTCTGGGATAAATTTTGAAGTTGTTGCTCTGATGGCCATAAAAAGTGACTTGATTGATCCCCACAATGTCCTGGAGAGTTGGGATAGTAATTCTGTAGATCCTTGTAGCTGGAGGATGGTTACTTGTTCCGCAGATGGCTACGTCTCTGCCTTGGGATTGCCTAGTCAGAACTTGTCTGGTACACTATCTCCTTGGATTGGAAACCTGACAAACTTGCAATATCTGTTGCTTCAGAACAATGACATTTCTGGTCCAATTCCTGCTGCAATAGGAAAGCTGGAAAAGCTTCAGACACTTGATCTTTCCAATAATGCATTTGGTGGTGAGATACCCAGTTCTTTGGGAGGACTCAAGAACCTGAATTATTTGGACCTCTCTTATAACAATCTGAGTGGTTCCTTGCCAAGAACAACAGCAAGAACATTCAAGATTGTGGGTAACCCTTTAATTTGTGGTTCAAGGGCCAGTAACTGTTCTAATGTTTTGCCGGAGCCACTTTCCTTCCCGCCAGATGGTCTAAGAGACTCTGGAACAAAAAGCCAACGTGTGGCAATTGCCTTTGGTGCAAGTTTTGGTGCTGCTTTTGCTATTGTGATTATTATCGGGTTTCTTGTTTGGTGGCGGTATAGACACAATCAGCAGATATTCTTTGATGTTAATGATCATATTCATGGTCGGCCAGCTTTAGATTGGGTGAGGCGGAAGAGAATAGCTTTAGGTACAGCAAGAGGATTGGTTTATTTGCACGAGCAATGCGATCCAAAAATTATTCACCGCGATGTCAAAGCAGCCAACATATTGCTGGATGAAGACTTTGAAGCAGTTGTTGGTGATTTTGGTTTGGCAAAGCTTTTGGATCACAGAGATTCCCACGTGACCACAGCTGTGCGTGGCACGGTTGGTCACATTGCTCCGGAATACTTATGTACAGGTCAGTCATCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTTCTCGAGCTGATCACAGGTCATAAGGCCTTGGATTTTGGGCGAGCAGCAAACCAGAAAGTTGTAATGCTTGATTGGGTTAAGAAGCTCCATCAGGATGGAAGATTAAGCCAAATGGTGGACAAAGATTTAAAGGGAAACTTTGACCATGTTGAATTGGAGGAAATAGTTCAGGTAGCACTCTTATGTACAAAATTCAATCCTTCCCACCGTCCCAAGATGTCCGAAGTATTAAAGATGTTGGAAGGCGATGGCTTAGCCGAGAGATGGGAGGAGGCCTCACAGAAGATTGAGACGCCGAGGTTCCGGTCTTGTGAAAACCCTCCTCAAAGATATTCAGATTTTATAGAAGAATCTTCACTCATAGTAGAAGCTATGGAGCTTTCTGGCCCCAGGTGA 1458 0.439 MANISSIFWLLGFLLLPLMEISSGALSPSGINFEVVALMAIKSDLIDPHNVLESWDSNSVDPCSWRMVTCSADGYVSALGLPSQNLSGTLSPWIGNLTNLQYLLLQNNDISGPIPAAIGKLEKLQTLDLSNNAFGGEIPSSLGGLKNLNYLDLSYNNLSGSLPRTTARTFKIVGNPLICGSRASNCSNVLPEPLSFPPDGLRDSGTKSQRVAIAFGASFGAAFAIVIIIGFLVWWRYRHNQQIFFDVNDHIHGRPALDWVRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLCTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKVVMLDWVKKLHQDGRLSQMVDKDLKGNFDHVELEEIVQVALLCTKFNPSHRPKMSEVLKMLEGDGLAERWEEASQKIETPRFRSCENPPQRYSDFIEESSLIVEAMELSGPR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0882 485 FunFam Somatic embryogenesis receptor-like kinase 1 238 454 - -
Glsi05g0882 485 FunFam Leucine-rich repeat receptor-like protein kinase 31 174 - -
Glsi05g0882 485 Pfam Protein kinase domain 248 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0882 485 ProSiteProfiles Protein kinase domain profile. 124 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0882 485 Pfam Leucine rich repeat 79 133 IPR001611 GO:0005515
Glsi05g0882 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Glsi05g0882 485 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Glsi05g0882 485 Gene3D Ribonuclease Inhibitor 30 188 IPR032675 -
Glsi05g0882 485 SMART serkin_6 223 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0882 485 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 239 445 - -
Glsi05g0882 485 SUPERFAMILY L domain-like 33 166 - -
Glsi05g0882 485 SUPERFAMILY Protein kinase-like (PK-like) 246 435 IPR011009 -
Glsi05g0882 485 Gene3D Transferase(Phosphotransferase) domain 1 246 453 - -
Glsi05g0882 485 PRINTS Leucine-rich repeat signature 124 137 - -
Glsi05g0882 485 PRINTS Leucine-rich repeat signature 145 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0882 Glsi-ChrGlsi05 59061128 59065314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0882 232 485 Receptor kinase-like Gene Family AT1G60800 75.479 7.23e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi05g0882 Pkinase 5.8e-26 CL0016