Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0877 ATGTCAACACTTAACCATCTTTTTGGTCTTCCAGAGCAAATATGCTACGTACAATGTGGATTCTGTACCACCATTTTAATGGTTAGTGTTCCATGCAGCAGTTTGTCAATGGTGGTGACAGTCAGATGCGGGCACTGCACAAGCCTCCTCTCAGTTAATATGATGAAAGCTTCTTTTGTCCCCTTCCATCTTTTAGCTTCCTTTAGTCATCTTCAGCCAAAAGAAGGCAGTCCAGAAGAGGATGCAAACAAGACCTTGGAAAGCCATAATGCATTCAGGATGACCTATTCTGATTGCGAGGAAGAGGATGTAATTCCCATGAGCAATGTCGTAAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACCGCTTCATCAAAGAAGAGATCAGAAGGCTAAAGGCTCAAAACCCTGACATGGCTCACAAGGAAGCTTTTAGCACAGCTGCAAAAAATTGGGCCAATTTCCCCCCAACTCACTGCGAAGAAGATGAAAAGAGCAGTAGCAACAGAGAACAACTTGTGGATCTGGAGTCCCATTTGGACCCTCATGAAGATGCTGAGGTAAAGGTTAATGAAGAAGGCCAAGGTTTCCGTGAAAGAAAGGTTCCAAGGAATTTCATCTGGGCAAGGACACCGTTTGAGTGA 657 0.4429 MSTLNHLFGLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASFSHLQPKEGSPEEDANKTLESHNAFRMTYSDCEEEDVIPMSNVVNKPPEKRQRTPSAYNRFIKEEIRRLKAQNPDMAHKEAFSTAAKNWANFPPTHCEEDEKSSSNREQLVDLESHLDPHEDAEVKVNEEGQGFRERKVPRNFIWARTPFE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0877 218 Pfam YABBY protein 11 164 IPR006780 GO:0007275
Glsi05g0877 218 Gene3D High mobility group box domain 108 199 IPR036910 -
Glsi05g0877 218 PANTHER PROTEIN YABBY 6-RELATED 4 176 IPR006780 GO:0007275
Glsi05g0877 218 FunFam Axial regulator YABBY 4 108 175 - -
Glsi05g0877 218 SUPERFAMILY HMG-box 109 161 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0877 Glsi-ChrGlsi05 59023333 59025018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0877 2 218 C2C2-YABBY Transcription Factor Family AT1G23420 58.261 2.46e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Glsi05g0877 YABBY 6.3e-64 CL0114