Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0873 ATGTTGGGGGCCAACAATGGTAATCCTGTGCTTCCTGTTTTCTTGGATGAGACTCAGTTTCAGTATCAAAGTAATGCAGCAAATCAACTGCAGTTGTTTGGAAACTTACAAGCTGGATGCAGTATGGATCCAGTAAATTACTTTGGAAATGAGCATATCAGTTCCATGATTCGACCTAATAAACGAAGCAAGGAAATGGAAGATATCTCAAAGCAGCAAAGGCTTCAGATTTCCTTGAATTATAATGGCTGTCAAGATGAACCTGATCGATCAGCAAGCATTCCAAACCCAAACCCTGTGTCAACAGGATTGAGGCTATCTTATGACGATGATGAGCATAACTCATCTGTTACTTCTGCAAGTGGCAGCATGACTGGCGCCCCTTCAATCATATTATCCCTTGGTGACAATATTAGAACTGAGCTTGATAGGCAGAAAGAAGAGTTGGACCAGTTTATTAAGCTTCAGAAGGAACAATTGTCAAAAGGAGTGAGAGACATGAAACAAAAACACATGGCTTCTCTCCTTGCTGCCATTGAGAAAGGTGTCAGCAAGAAGCTAAGGGAAAAAGATGTGGAGATAGAGAACATGAACTGTAAAAATAGGGAACTAGCAGAGAGAATAAGGCAGGTGGCTATTGAAGCACAAAACTGGCATTACAGAGCAAAGTATAATGAGTCAGTTGTTAACTTACTAAAGAACAATCTCCAGCAAGCAATCTCACAAGGAGTTGAACAAGGGAAGGAAGGGTTTGGAGATAGTGAAGGTGATGATGCTGCTTCATACATTGATCCCAATAACTTTTTGAACATCCCTGCGGTCCCTGTGAAATCAACTTCCCAGAACAAGCAAGGCATGGAGCATCTGACTTGCAGAGCATGCAAGGCAAAGGAGGTTTCCATGTTGTTGATGCCTTGTAGGCACCTGTGCTTGTGTAAGGACTGTGATGGATTCATCAATGTTTGTCCTGTATGCCAAATGATAAAATCTGCAAGTGTCCAAGTGTATCTGTCTTAA 1017 0.4169 MLGANNGNPVLPVFLDETQFQYQSNAANQLQLFGNLQAGCSMDPVNYFGNEHISSMIRPNKRSKEMEDISKQQRLQISLNYNGCQDEPDRSASIPNPNPVSTGLRLSYDDDEHNSSVTSASGSMTGAPSIILSLGDNIRTELDRQKEELDQFIKLQKEQLSKGVRDMKQKHMASLLAAIEKGVSKKLREKDVEIENMNCKNRELAERIRQVAIEAQNWHYRAKYNESVVNLLKNNLQQAISQGVEQGKEGFGDSEGDDAASYIDPNNFLNIPAVPVKSTSQNKQGMEHLTCRACKAKEVSMLLMPCRHLCLCKDCDGFINVCPVCQMIKSASVQVYLS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0873 338 Coils Coil 187 214 - -
Glsi05g0873 338 PIRSF SBP1_RNase_bind 1 338 IPR017066 -
Glsi05g0873 338 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 54 335 IPR017066 -
Glsi05g0873 338 MobiDBLite consensus disorder prediction 82 122 - -
Glsi05g0873 338 Pfam Zinc finger, C3HC4 type (RING finger) 288 326 - -
Glsi05g0873 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 338 IPR013083 -
Glsi05g0873 338 MobiDBLite consensus disorder prediction 82 103 - -
Glsi05g0873 338 ProSiteProfiles Zinc finger RING-type profile. 291 326 IPR001841 -
Glsi05g0873 338 CDD mRING-HC-C3HC5_CGRF1-like 290 325 - -
Glsi05g0873 338 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 273 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0873 Glsi-ChrGlsi05 59006478 59008824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0873 287 336 C3H Transcription Factor Family AT1G73950 38.000 9.72e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0873 05 59006478 59008824 Glsi05g0873 05 59006478 59008824 ECH