Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0862 ATGAGACCCACAGAAAATCGGTTGCAGGTTGAACTGCATAGAGAGAGTGCCGAGCTTGTACTTTATGGGTTGCTTTCGCTGCTGCTTCTTGAACCTTTAGGAATTGGTATGGTCAAAGCTGCTTCTGGCCCTCATTCTTCTGCAGGGGAGGAGACGCAGACAATGAGGGGTTTGGGGGTATCAGTGGAATGGCTTAGACTTAGACCCTTGGTTGAGACTAAGGGTTGGGATTACATTGTTGTTTGGAAATATGGGGATGACCCAACAAGGTTTATCGAGTGGGTGGGTTGCTGTTGCAGTGGGCGCTGCAACGGAAACACTGGGCAGGTCAAGACCGAAGAGGAAAAAGGTGAAGAATGCCGATTGATTCCTATGTGCAGGGATAGTCACTTTCAGCATCCAGTGAGAACAAAGACTTGTGAGGCTCTTGCCCAGCTTCCTTATACAATGCCGCTTTATTCTGGCGTCCATGGAGATGTGGCGATATCAAAACATCCCAGGTGGATTACCCAGGATCCAACTGGAACGCAAGTTTTGATCCCTATTATTGGTGGTCTAATTGAGCTCTTCGCAGCAAAGCTTATTCCAAAAGATATAAGAATTGTAGAGTTCATAACAGCAAACTGCTGTGTCTCTATGAAGAAAGAAGCCATGGTTGCACAGAGCTACAAAAGTCTGAGCCTCAATGAACGTCCACCATTTGAAGAATATCATCCACGAAGTTGGCCGCCACCTGCCCCACCAACGCCAAGTTTAGTTTCTAGCGTACATGTGCCTGCATTAAACCAGTGCAGCTCCCATCCTAGCATTGAAGGATCCTCCAGTGGGTCAAATCCTTCAAATGAACTTCCATCATTTGATTCAGAATTTGTTTACCTGACTCAGCATGAATCTCTGAAGAAGTCAGCTAAGAAATCTACTAGCTCTAAGAGGCCCAAGGACAGAGAAACTTCAGGTGGCACACTGGAAGAAGATCAATCAGAGTTGATCAGGGAACCTCAAAGGGAAGGCTACCTATCTAAAAATCTTGTCACTGAGAGGAATAGGAGGAACAGGATCAAAGAAAGGCTCTTTAATCTACGATCTTTAGTCCCAAAGATAACTAAGATGGATAGGGCAGCAACTCTTGGAGATGCAATTGATTATATAAAGGAATTGCAGGAACAAGTACAAGGACTTAAAGATGAGATCACAGTTTTGGAAGAAGAGAACTGCAAGAACAACACACCACATTTGAGGAGGCCAACAAGCAAGGAACAAGGAGAGACTAGATGTCTCCCTCTAAATGAAGGCATCCAAAGTTTCTCTCGTTGCACTAAAAAGACGCAGATGGAGGTAGAAAGAGCTGGCATAACTTCTGCTTCACTGTTTTTTCTAAGCTATGTAGCTGATGCCAACATGACCACATTGGACGGAAAAGTCCTCAACATTCTTACGGCTGAGGTGAGAATGAGAAGATTCATGACTGAGTTATCAGCGAAGTCATTCTGA 1491 0.448 MRPTENRLQVELHRESAELVLYGLLSLLLLEPLGIGMVKAASGPHSSAGEETQTMRGLGVSVEWLRLRPLVETKGWDYIVVWKYGDDPTRFIEWVGCCCSGRCNGNTGQVKTEEEKGEECRLIPMCRDSHFQHPVRTKTCEALAQLPYTMPLYSGVHGDVAISKHPRWITQDPTGTQVLIPIIGGLIELFAAKLIPKDIRIVEFITANCCVSMKKEAMVAQSYKSLSLNERPPFEEYHPRSWPPPAPPTPSLVSSVHVPALNQCSSHPSIEGSSSGSNPSNELPSFDSEFVYLTQHESLKKSAKKSTSSKRPKDRETSGGTLEEDQSELIREPQREGYLSKNLVTERNRRNRIKERLFNLRSLVPKITKMDRAATLGDAIDYIKELQEQVQGLKDEITVLEEENCKNNTPHLRRPTSKEQGETRCLPLNEGIQSFSRCTKKTQMEVERAGITSASLFFLSYVADANMTTLDGKVLNILTAEVRMRRFMTELSAKSF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0862 496 Coils Coil 376 403 - -
Glsi05g0862 496 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Glsi05g0862 496 MobiDBLite consensus disorder prediction 238 252 - -
Glsi05g0862 496 MobiDBLite consensus disorder prediction 234 254 - -
Glsi05g0862 496 SMART finulus 343 392 IPR011598 GO:0046983
Glsi05g0862 496 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 66 206 IPR025610 -
Glsi05g0862 496 Gene3D - 333 414 IPR036638 GO:0046983
Glsi05g0862 496 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 201 484 - -
Glsi05g0862 496 MobiDBLite consensus disorder prediction 301 334 - -
Glsi05g0862 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Glsi05g0862 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 407 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0862 Glsi-ChrGlsi05 58949310 58952683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0862 340 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 51.389 5.26e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g0862 bHLH-MYC_N 6.5e-15 CL0161