Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0861 ATGAGGAACTTGTTGGAAGTTTTGATCAAGTCAGAAATGGCTTCCGAAAACTCCAACGATGATTCGAAGTCGAAACAAGATGGATCTTTTGGGGTCAAATTGGAAAATGATTCTGATTCCACTAATTCCTCCCTGATTGTGGCTCCATCACCCTATGCTTCTTTGTCCCCAGGTGCTTCAGATTCTCCGCAAGTTTCTCCGTCAACGTCTCCGCCCCCGCCATCGCCTTCTCCCCCGCCTCCGTCAAGTTCGCCGCCGCCATCTCCCCCGCCTCCTTCAAGTCCGCCGCCTAAAGCTTCACCGCCTCCACCTGCATCATCCCCGCCGCCATCGTCAACACCACCACCACCCTCTCCGTCACTGTCACCTCCACCGCCACCGCCAGCTACTAGTCCCCCTCCTAAAGAGTCATCTCCACCTCCACCACAATCACAATCCCCACCTCCATCACAATCACCACCCCCGCCTGCGAACTTTTCTCCACCTCCATCTCCATCTCCACAGGAGAAGTCGCCTCCACCGGCACCTGCACCCTCCAATAATTCATCCGCCTCGGGTTCTGAAACCTCTGGCACCCCACCACCACCCGCTTTTCTTTCCCCTCCAAATGCCATTTCCCCACCGAATACATCCAGCTCCCCTCCGCCACCAACAGGGTCGAACCCTCCTCCACCTGTTCAGTCATCAAGCTCGAATTCTGGCTCTCCCACAGAATCAAGCGGTTCTTCTAATAATTCCCCGCCGTCATCCTCAGATGGTGGCGGAGAAAATTCGGGAATGTATGTTGGCTATGCAATGGCCGGAGTGTTCACTTTTGCCCTTGTTGCTTTCGTTCTTATATTTGCAATGAGGAGGAAGAAAAAACAGAAAGAAATCTATGCTCAGCCTTATACGTCTCCTAATAACTTTTCTAAAAAAGCAGGTCCAGAAGGGCATTTCTATGCACAGGGTATGGCGAGAAGTCCAAAAGATAGCATTTATAGTTCACAACCACCACTATCTCCCAACTATGGAAGTGAGAGCCAAAGAGGAGGAGTTGTGCAACATTTAGGGACTCCAGAGTCAGGGCCCTGGAGTGGTCAGGTAGCTTTTAGCTATGAGAAGATTATGGAAATAACTAAAGGATTTTCTAGTGAAAATGTCATCGGGGAGGGGGGATTTGGATGTGTATACAAGGGTTGGCTGGCAGATGCAAAAGCAGTAGCTGTGAAGCAGCTTAAGATTGGCAGTGGACAAGGTGAAAGGGAATTTCGGGCGGAGGTTGAGATCATTAGCCGTGTTCATCATCGGCATTTGGTATCATTAGTTGGTTATTGCGTTGCTGATCAGCGAAGAGTGCTTATCTATGAGTTCGTTCCCAATGGAAATCTAGATCATCACTTGCATGGCAGAGGAATGCCGGTGTTGGATTGGGACAAAAGGATGAAGATAGCAATTGGAGCGGCAAAAGGCCTAGCATATTTGCATGAAGACTGCAACCCAAAGATTATCCACAGAGATATTAAGTCGGCAAACATACTTTTGGATGATGCTTATGAAGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAACTGATGATGCTAATACCCACGTATCAACTCGGGTTATGGGGACATTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTGACGGATAGATCAGATGTTTTCTCCTTCGGAGTTGTCCTCCTGGAGCTTGTAACTGGGAGGAAACCTGTTGATCAAACTCGGCCAGTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCGTCGTGCAATTGATACCCGAGACTTTAGTGAATTAGTGGACCCAAGGCTTGAAATGCATTTCGTGGAGAGTGAGATGTGCAGAATGATTGAAGCTGCTGCAGCTTGTGTTCGCCATTCTGCTCCAAAACGACCCCGCATGGTTCAGGTGGTAAGAGCCTTGGATAGTGAAGAAGAATCATGTGACCTATCTAATGGGGTGAAATATGGTCAGAGCACTGTTTATGATTCCAGCCAGTATAATGACGACATTATCATGAGATTCAGAAAGATGGCAACTGGCAGCATTGTTGATTCCGAATTTGACGTGAGCAGTGGAGAATACAATTCTTCAAGAGAGTTTTCTGGACAACATGCATGGGCACGGGGTAGTTCAAGTGGCGAGTCTGAGTGTCGTGCTTTCAATACAAGGACGAGTACTACTGAGCAAGGGCCTGTATGA 2226 0.487 MRNLLEVLIKSEMASENSNDDSKSKQDGSFGVKLENDSDSTNSSLIVAPSPYASLSPGASDSPQVSPSTSPPPPSPSPPPPSSSPPPSPPPPSSPPPKASPPPPASSPPPSSTPPPPSPSLSPPPPPPATSPPPKESSPPPPQSQSPPPSQSPPPPANFSPPPSPSPQEKSPPPAPAPSNNSSASGSETSGTPPPPAFLSPPNAISPPNTSSSPPPPTGSNPPPPVQSSSSNSGSPTESSGSSNNSPPSSSDGGGENSGMYVGYAMAGVFTFALVAFVLIFAMRRKKKQKEIYAQPYTSPNNFSKKAGPEGHFYAQGMARSPKDSIYSSQPPLSPNYGSESQRGGVVQHLGTPESGPWSGQVAFSYEKIMEITKGFSSENVIGEGGFGCVYKGWLADAKAVAVKQLKIGSGQGEREFRAEVEIISRVHHRHLVSLVGYCVADQRRVLIYEFVPNGNLDHHLHGRGMPVLDWDKRMKIAIGAAKGLAYLHEDCNPKIIHRDIKSANILLDDAYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDQTRPVGDESLVEWARPLLRRAIDTRDFSELVDPRLEMHFVESEMCRMIEAAAACVRHSAPKRPRMVQVVRALDSEEESCDLSNGVKYGQSTVYDSSQYNDDIIMRFRKMATGSIVDSEFDVSSGEYNSSREFSGQHAWARGSSSGESECRAFNTRTSTTEQGPV 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0861 741 Gene3D Phosphorylase Kinase; domain 1 349 451 - -
Glsi05g0861 741 ProSiteProfiles Protein kinase domain profile. 376 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0861 741 SMART serkin_6 376 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0861 741 MobiDBLite consensus disorder prediction 33 65 - -
Glsi05g0861 741 FunFam Proline-rich receptor-like protein kinase PERK8 352 451 - -
Glsi05g0861 741 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Glsi05g0861 741 Gene3D Transferase(Phosphotransferase) domain 1 452 669 - -
Glsi05g0861 741 MobiDBLite consensus disorder prediction 714 741 - -
Glsi05g0861 741 MobiDBLite consensus disorder prediction 297 346 - -
Glsi05g0861 741 MobiDBLite consensus disorder prediction 322 346 - -
Glsi05g0861 741 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 269 694 IPR047117 -
Glsi05g0861 741 FunFam proline-rich receptor-like protein kinase PERK8 452 664 - -
Glsi05g0861 741 MobiDBLite consensus disorder prediction 16 32 - -
Glsi05g0861 741 MobiDBLite consensus disorder prediction 9 254 - -
Glsi05g0861 741 Pfam Protein tyrosine and serine/threonine kinase 379 649 IPR001245 GO:0004672|GO:0006468
Glsi05g0861 741 PRINTS Proline rich extensin signature 89 106 - -
Glsi05g0861 741 PRINTS Proline rich extensin signature 51 72 - -
Glsi05g0861 741 PRINTS Proline rich extensin signature 107 132 - -
Glsi05g0861 741 PRINTS Proline rich extensin signature 72 88 - -
Glsi05g0861 741 MobiDBLite consensus disorder prediction 194 224 - -
Glsi05g0861 741 CDD STKc_IRAK 382 650 - -
Glsi05g0861 741 MobiDBLite consensus disorder prediction 66 179 - -
Glsi05g0861 741 SUPERFAMILY Protein kinase-like (PK-like) 358 649 IPR011009 -
Glsi05g0861 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Glsi05g0861 741 MobiDBLite consensus disorder prediction 225 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0861 Glsi-ChrGlsi05 58944913 58948563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0861 242 703 Trihelix Transcription Factor Family AT1G70460 63.889 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi05g0861 PK_Tyr_Ser-Thr 1.2e-48 CL0016