Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0846 ATGCCGACGCGTGTCAGAGTCGATCCCCTTCCTATAAATATCCGAAACCCACGTCCGCATCGAAAGCAAGATAAGCAGATAGATCATCCAAACACAAAATCCAGCCACAAGCTGCTTCTTTTTTTTTTTCCCCCTCTTCCAATGATCCGGAATTCATACGGGTTTGACCGCCGGATTTTGACCTTTCCGGCGGTTCATCCCTGCGAGGACATTGCTCTTGCTACCCTTCTTTATTCTCTGATCACTATCTCTCAAAGCATTTGCAATTTCAAATCAAAATTTTTCTCCAGCAACAAGCGAAATGCGAGAAAAGCTATTCGTCTGATCGAGGTTCTTCAACTTTTCCTGGAAGAAATCCGAGACCAGCAATTTAGTCTTCCGGTTTCTGTGATTCTGAGCTTGTCGGAGCTCCATTTGGCCTTCCAGAAGCTTCAGTTCCTGCTGGAAGACTGCACTCAGGAAGGCTCTCGGCTATGGACGTTGATGGCCTCAGAACGGGTGGCGACACAGTTCCAGGTCTTGTCCAGATCAGTAGCCACGGCTTTGGATGTTTACCCTTTCCGTTCTATTGAGGTTTCGGAGGAAGTTAAAGAGCTGGTCGAGTTGCTAGTGAAGCAAACCCGAAAGAGCAGGGTTGAAGTTGAACCCGATGACAAACGGGCTATGATGGGTGTTATGTCCATTTTGAATCAATTTGATAATCTGATTACTCCAAGTGAGAGTGATATAAAATGGATTCTTGATCATATTGGAGTTCGGAGATGGAGTGAGTGTAATAAAGAGGTTAAGTTTTTAGATGCAGAAATTGGGTTTGAGCGATTGAATGAAGAAAAAGGAAAGTTAGCATTTTTAAGTAGTTTAAGGGGGCTCATGAGCTTCTGCAGATGCGTAGTGATTAAAGTTGTAGATGGTGGAGATGACCCTAAATCTGAAGGCAAAGAAATCAGAACTGACAGTAAGATACTGAGTGGCCTGAACCCAGATGATTTTCGATGTCCGATCTCTCTGGAGTTCATGACGGACCCAGTGACGATAGAGACTGGTCATACTTATGATCGATCATCAATTCTTAAATGGTTTAGCAGTGGAAATCCCATCTGCCCCAAGACAGGTAGAAGGCTTAGCAGCATTGAACCGGTCCCTAATTTGGTGCTTCGGAGGTTGATTCAGCATTATTGTTCTGAAAATGGCATTCCTAATCCTACGACTGATCCGGGTCGGAAGAATCGTGACACTACAAGGACTTCGCAGCCTGGAAGTTTAGCAGCAGCTGAAGCCATGAAAATGCTGGCAAATCTTCTGAGAGACAAGCTTGAGAATGGAGCAGAGGAAGAGACGAACAAATCTGCTTATGAAATCCGGGTTCTTACCAAATCAAACCTTTTCAATAGGTCTTGTTTGGTGGAAGCTGGAACAATACCTCATTTGTTGAAGCTGTTATTATCGAGGAATTCAACAACACAAGAAAATGCCATAGCAAGCCTTCTGAACCTCTCGAAACACCCTAAGAGCAGAACTGTGATAGTTGAGAATTGGGGATTGGAATTGATAGTGAATGTGCTAACGAAGGGGCCAAAGATGGAAGCTCGCCACCATGCTGCTGCTACTTTGTTTTACCTTTCTTCGGACGAGGAGTACAGGAAACTGATAGGGGAGGAGCCAGAAGCAATCCCATCTTTGATCAAGCTCATCAAAGATGGCTCTGATCGAGGTAAAAAGAATGGCTTGGTTGCAATCTATGGCCTCCTCATGCACCCTGACAATCATAGGAGGGTTCTTGCAGCTGGGGCTATTCCTTTGCTGGTTAAAATCTTAAAGTCCTGTGATAGAGAAGAGCTTGTCACAGATTCACTAGTAGTCTTAGCAACCCTGGCCGAGAAAAGTGATGGAACAATTGCAATCCTTAATTCTGGAGCACTGCATCTAGCTGTCGAAATTTTGAGTTCTTCCACTTCAAAGGTGGGGAAGGAGTACTGTGTCTCTTTCTTGCTTTCTCTGTCAATCCATGGAGGAGAAGACGTTGTTTCTCTTTTAGTGAAGAGCCCTACTCTCATGGGTTCCTTATATTCTTTACTCAGTGAAGGCACATCTCGATCAAGCAAGAAAACCAGTGCTCTCATCAGGGTCCTCCATGATTTTTGTGAAAGAAGGCCCTCTGGCTTCAAGAGTTCAGTTCTTCCACAAGAACAATTTATTCACGCATGGTAA 2208 0.4438 MPTRVRVDPLPINIRNPRPHRKQDKQIDHPNTKSSHKLLLFFFPPLPMIRNSYGFDRRILTFPAVHPCEDIALATLLYSLITISQSICNFKSKFFSSNKRNARKAIRLIEVLQLFLEEIRDQQFSLPVSVILSLSELHLAFQKLQFLLEDCTQEGSRLWTLMASERVATQFQVLSRSVATALDVYPFRSIEVSEEVKELVELLVKQTRKSRVEVEPDDKRAMMGVMSILNQFDNLITPSESDIKWILDHIGVRRWSECNKEVKFLDAEIGFERLNEEKGKLAFLSSLRGLMSFCRCVVIKVVDGGDDPKSEGKEIRTDSKILSGLNPDDFRCPISLEFMTDPVTIETGHTYDRSSILKWFSSGNPICPKTGRRLSSIEPVPNLVLRRLIQHYCSENGIPNPTTDPGRKNRDTTRTSQPGSLAAAEAMKMLANLLRDKLENGAEEETNKSAYEIRVLTKSNLFNRSCLVEAGTIPHLLKLLLSRNSTTQENAIASLLNLSKHPKSRTVIVENWGLELIVNVLTKGPKMEARHHAAATLFYLSSDEEYRKLIGEEPEAIPSLIKLIKDGSDRGKKNGLVAIYGLLMHPDNHRRVLAAGAIPLLVKILKSCDREELVTDSLVVLATLAEKSDGTIAILNSGALHLAVEILSSSTSKVGKEYCVSFLLSLSIHGGEDVVSLLVKSPTLMGSLYSLLSEGTSRSSKKTSALIRVLHDFCERRPSGFKSSVLPQEQFIHAW 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0846 735 PANTHER U BOX DOMAIN-CONTAINING 99 710 - -
Glsi05g0846 735 SMART arm_5 627 668 IPR000225 GO:0005515
Glsi05g0846 735 SMART arm_5 459 500 IPR000225 GO:0005515
Glsi05g0846 735 SMART arm_5 585 626 IPR000225 GO:0005515
Glsi05g0846 735 SMART arm_5 501 542 IPR000225 GO:0005515
Glsi05g0846 735 SMART arm_5 543 584 IPR000225 GO:0005515
Glsi05g0846 735 SUPERFAMILY ARM repeat 426 710 IPR016024 -
Glsi05g0846 735 CDD RING-Ubox_PUB 327 376 IPR045210 -
Glsi05g0846 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 399 IPR013083 -
Glsi05g0846 735 Gene3D - 554 711 IPR011989 -
Glsi05g0846 735 FunFam RING-type E3 ubiquitin transferase 408 721 - -
Glsi05g0846 735 Gene3D - 422 553 IPR011989 -
Glsi05g0846 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 639 IPR000225 GO:0005515
Glsi05g0846 735 SMART Ubox_2 329 392 IPR003613 GO:0004842|GO:0016567
Glsi05g0846 735 MobiDBLite consensus disorder prediction 1 31 - -
Glsi05g0846 735 SUPERFAMILY RING/U-box 324 399 - -
Glsi05g0846 735 MobiDBLite consensus disorder prediction 15 31 - -
Glsi05g0846 735 Pfam Armadillo/beta-catenin-like repeat 463 499 IPR000225 GO:0005515
Glsi05g0846 735 ProSiteProfiles U-box domain profile. 325 399 IPR003613 GO:0004842|GO:0016567
Glsi05g0846 735 MobiDBLite consensus disorder prediction 395 420 - -
Glsi05g0846 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 513 IPR000225 GO:0005515
Glsi05g0846 735 FunFam RING-type E3 ubiquitin transferase 326 398 - -
Glsi05g0846 735 Pfam U-box domain 327 396 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0846 Glsi-ChrGlsi05 58845879 58848086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0846 48 735 U-box Gene Family AT1G10560 46.296 0.0 601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0846 05 58845879 58848086 Glsi05g0846 05 58845879 58848086 ECH