Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0839 ATGGGGAAGTATCCTCCTCCGGGGGAAGTTCCGAGTCCCAACCGACTTGATATCATTTCGGCGAAACGCGGCGACTGGATGAACACGGGCCTACAACTACCCCAGCCATCACGTGGTGGCCACGAGTTGTGTGACATGACTCTCAGCGTCATTGAAGTTTGATGGAAGAGATGTGTCATGAACAGAACTAAAATTGCCTGGTTTACGTGTGAGTGCTCTGGTAATATCATGTCAAGACATAGGAAGTGTAAACATCTTCATGAATTGAATGTCTTCTCTAGTTGGCATTTGCCTTTACCCAATGGACTTGATAGAAAGAAGGATATTAAAGAAAAGGTCACCCTCCCTCTACCTATCATGGCATCAAGATCATATGCTAATCTTCTAGGCTTAGTTGGTGGAGACTCGTCAGACGTCCCTCACACCCCAAGAACTCTTCCAAGGGTTATGACAGTTCCTGGAATTATTTCTGACCAGGATGGCTATGGTAATAACGATGGGGATTCAGATGTTAGCTCTTCTGGGTATCGGGAGCGCAAAATTATAGTGGCAAACATGCTGCCTTTGCAGGCTAAAAGAGATACTGAAACTGCTAAATGGTGCTTCAGTTTGGATGAGGATTCAATTTTATTACAATTAAAAGATGGTTTGTCTTCTGATACTGAGGTTATCTATGTGGGTTCTCTGAAGGTTGAAATAGATGCCAGTGAGCAGGAAGAAGTTGCTCAGAAATTACTGGAGGACTTCAATTGTGTCCCTACCTTTCTACCACATGAACTCCAGAAAAAGTTTTATCTTGGCTTTTGTAAGCAGCAGCTATGGCCTCTCTTTCATTACATGCTACCTATGTGCCCAGATCACGGTGATCGCTTTGATCGGCTGCTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTTGTGGAAATAATTAATCCTGATGACGATTTTGTTTGGGTTCATGACTATCACTTGATGGTTTTGCCTACATTTTTAAGGAAGCGATATAATCGAGTTAAACTTGGATTCTTCCTTCACAGTCCTTTCCCTTCATCTGAAATTTACCGAACTCTGCCTGTACGAGATGAAATTCTGAGGGGATTGTTGAATTCTGACTTAATTGGTTTTCATACATTTGATTATGCTCGCCACTTCCTCTCTTGCTGCAGCAGAATGCTGGGTCTGGACTATGAATCTAAGCGGGGACATATAGGACTTGATTACTTTGGCCGCACTATATACATCAAAATTTTGCCTGTGGGTATTCACATGGGTAGGCTTGAATCTGTATTAAATCTTCCTTCTACATCTGCTAAAATAAAAGAGATTCAAGAACAGTTTAAGGGTAGGAAGGTGATTCTTGGTGTTGACGACATGGATATCTTTAAGGGCATCAATCTGAAACTTCTAGCTGTGGAGCAGCTGCTGCAGCAGAACCCAGATTTGCAGGGAAAAATTGTCCTAGTTCAAATTGTAAATCCTGCAAGGGGTTCAGGGAAGGATGTTCAGGAAGCAAAGAAGGAAACATATTTAATTGCCCAGAGGATCAATGATATATATGGCTCAAAACATTATCTGCCAGTTATTCTCATTGACCGTCCTGTTCCTCATTTTGTGAAGAGTGCCTATTATGCTGTAGCTGAGTGTTGCATTGTCAATGCTGTGAGGGATGGTATGAACTTAGTCCCATACAAATATGTTGTCTGCAGACAAGGAACTTCTCAACTGGACAAAGCATTGGGTAGAAAAAATGATTATCCTTGCACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGCTCCCCTTCATTGAGCGGAGCAATTAGGGTCAATCCCTGGGATGTTGATGCCGTCGCTGATGCTCTGAATTTGGCCATTACAATGCGTGATTCAGAGAAGCAATTGCGGCATGAAAAACACTATCGTTACGTCAGTTCTCATGATGTGGCTTACTGGGCACGCAGTTTTATGCAGGATTTGGAGAGAGCATGCATAGATCATGATACCAAAAGGTGCTGGGAAATCGGTTTGGGGCTAGGGTTCAGGGTTGTTTCTCTTTCTCCTGGTTTTAGGAAGTTGTCCATTGACCACATTGTTTCAGCGTACAAAAGAACCAATAGAAGGGCCATATTTCTTGATTATGATGGTACAGTTGTGCCACAATCTTCTATAAATAAAATCCCCAGCTCTGAAGTCATATCTGTGCTGAATACTCTCTGTAACGATGTCAAGAACAGTGTGTTCATTGTTAGTGGAAGGGGTAGAGATTCTCTAAGTGATTGGTTTGCTTCATGCAAAAAGCTGGGAATTGCAGCTGAACATGGGTACTTTTTAAGGTGGAGTAGAGACTCGGAATGGGAAACCAGTCACTTGTCTGCTGACCTTGATTGGAAAAATATTGTGGAACCAGTCATGACTTCGTATACAGAGTCAACTGATGGGTCTAATATTGAAATTAAGGATAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCAAAAGAATTGTTGGATCACCTGGAAAGTGTGCTTGCTAATGAACCAGCAGTGGTTAAGAGGGGGCAGCATATTGTTGAAGTCAAGCCACAGGGAATAAGCAAAGGTTTGGTTGCGGAAAATGTTCTTTCGACTTTGGTAAATGGCGGGAGTCCACCAGATTTTGTGATGTGCATTGGAGATGATAGGTCAGATGAAGACATGTTTGAGAGCATATTAAGGACAGTGTCTTGTCCATCATTGCCCATACCACCTGAGATCTTTGCTTGCACTGTTGGTCAGAAGCCTAGCAAGGCCAAGTATTATCTTGATGATGCTGCTGATGTTGTAAAATTGCTTCAGGGCCTTGCTACTGCATCAAATCCAAAGCCGAGGCATCTAGCGCAATTCCAGGTTTCATTTGAAAGCACAGTTTGA 2943 0.4264 MGKYPPPGEVPSPNRLDIISAKRGDWMNTGLQLPQPSRGGHELCDMTLSVIEVXWKRCVMNRTKIAWFTCECSGNIMSRHRKCKHLHELNVFSSWHLPLPNGLDRKKDIKEKVTLPLPIMASRSYANLLGLVGGDSSDVPHTPRTLPRVMTVPGIISDQDGYGNNDGDSDVSSSGYRERKIIVANMLPLQAKRDTETAKWCFSLDEDSILLQLKDGLSSDTEVIYVGSLKVEIDASEQEEVAQKLLEDFNCVPTFLPHELQKKFYLGFCKQQLWPLFHYMLPMCPDHGDRFDRLLWQAYVSANKIFADKVVEIINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIYIKILPVGIHMGRLESVLNLPSTSAKIKEIQEQFKGRKVILGVDDMDIFKGINLKLLAVEQLLQQNPDLQGKIVLVQIVNPARGSGKDVQEAKKETYLIAQRINDIYGSKHYLPVILIDRPVPHFVKSAYYAVAECCIVNAVRDGMNLVPYKYVVCRQGTSQLDKALGRKNDYPCTSMLVVSEFIGCSPSLSGAIRVNPWDVDAVADALNLAITMRDSEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACIDHDTKRCWEIGLGLGFRVVSLSPGFRKLSIDHIVSAYKRTNRRAIFLDYDGTVVPQSSINKIPSSEVISVLNTLCNDVKNSVFIVSGRGRDSLSDWFASCKKLGIAAEHGYFLRWSRDSEWETSHLSADLDWKNIVEPVMTSYTESTDGSNIEIKDSALVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVKRGQHIVEVKPQGISKGLVAENVLSTLVNGGSPPDFVMCIGDDRSDEDMFESILRTVSCPSLPIPPEIFACTVGQKPSKAKYYLDDAADVVKLLQGLATASNPKPRHLAQFQVSFESTV 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0839 980 FunFam Alpha,alpha-trehalose-phosphate synthase 433 648 - -
Glsi05g0839 980 CDD HAD_TPP 712 953 - -
Glsi05g0839 980 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 172 431 - -
Glsi05g0839 980 Pfam Trehalose-phosphatase 714 947 IPR003337 GO:0003824|GO:0005992
Glsi05g0839 980 SUPERFAMILY HAD-like 711 959 IPR036412 -
Glsi05g0839 980 Gene3D - 840 971 IPR023214 -
Glsi05g0839 980 Gene3D - 710 826 IPR023214 -
Glsi05g0839 980 Gene3D Glycogen Phosphorylase B; 173 431 - -
Glsi05g0839 980 NCBIfam trehalose-phosphatase 709 959 IPR003337 GO:0003824|GO:0005992
Glsi05g0839 980 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 710 827 - -
Glsi05g0839 980 CDD GT20_TPS 179 664 IPR001830 GO:0003824|GO:0005992
Glsi05g0839 980 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 179 667 - -
Glsi05g0839 980 Gene3D Glycogen Phosphorylase B; 432 648 - -
Glsi05g0839 980 NCBIfam HAD-IIB family hydrolase 712 913 IPR006379 -
Glsi05g0839 980 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 840 971 - -
Glsi05g0839 980 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 147 960 IPR001830 GO:0003824|GO:0005992
Glsi05g0839 980 Pfam Glycosyltransferase family 20 179 664 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0839 Glsi-ChrGlsi05 58783108 58791257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0839 120 980 Trehalose Biosynthesis Gene Families AT1G23870 74.510 0.0 1359
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0839 05 58783108 58791257 Glsi05g0839 05 58783108 58791257 ECH