Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0828 ATGCCATTTGGGTTGGTCGCAGCCTGGAACAAGCGCCGTAGAAGCAAGTCTCAAGATCACACAGACCCCTGGATATATAAACCTGTGGAGTTCTGGAAACTTGAAGATCAAACACCGCAACTCACAAAAAGGCGGCATGGATCATCTGTCTTCACACTCAAGGAGATGGAAGAGGCAACTCGTTCATTCAGTGATGATAATCTGCTTGGAAAAGGAGGATTTGGCAAAGTCTACAAGGGCACTTTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTGCCAGCAGTTAAAGCAGCAGAGGGAGAGCGTGAGTTCCGCGTGGAAGTAGACATCTTGAGCAGACTTGACCACCCAAATCTTGTTTCTTTGATTGGTTATTGTGCTGACGGAAAGCACAGATTCCTAGTATACGAGTACATGCATAATGGGAACCTGCAAGATCATTTGAATGGCATTGGAGAAAGAAAAATGGATTGGCCTCTGAGACTCAAAGTGGCACTGGGAGCTGCCAAAGGGCTAACTTATCTCCATTCAAGTTCTGCTGTTGGAATTCCTATTGTTCATAGGGATTTTAAATCCACCAATGTTCTCTTAAATGCTAACTTTGAAGCAAAGATATCTGATTTTGGGCTCGCCAAGTTAATGCCAGAAGGGCAGGAGACACATGTGACTGCCAGAGTACTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATCGACCGGGAAACTCACTCTACAAAGTGATGTTTACGCTTTTGGTGTTGTTCTCCTTGAGCTCTTGACCGGACGTCGAGCAGTGGATCTAAACCAGGGTCCAAATGATCAAAACCTTGTATTACAGGTGAGGCACATACTGAATGATCGCAAGAAGCTCCGTAAGGTGATAGATCCAGAGCTGGCTCGAAATTCTTACACCATTGAGTCTATAGCCATGTTTGCCAATCTGGCATCACGATGTGTCCGTACTGAAAGTAGTGAGAGACCTTCAATGGCTGAATGTGTTAAAGAACTCCAACTGATTATCTATACAAATTCAAAAGGCTTGGGAATGGTTATGCATAGTTTGAGAATGATCTAG 1086 0.4438 MPFGLVAAWNKRRRSKSQDHTDPWIYKPVEFWKLEDQTPQLTKRRHGSSVFTLKEMEEATRSFSDDNLLGKGGFGKVYKGTLRSGEVVAIKKMELPAVKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGIGERKMDWPLRLKVALGAAKGLTYLHSSSAVGIPIVHRDFKSTNVLLNANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPELARNSYTIESIAMFANLASRCVRTESSERPSMAECVKELQLIIYTNSKGLGMVMHSLRMI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0828 361 PIRSF ILK 33 352 - -
Glsi05g0828 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Glsi05g0828 361 CDD STKc_IRAK 69 343 - -
Glsi05g0828 361 Pfam Protein kinase domain 64 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0828 361 SUPERFAMILY Protein kinase-like (PK-like) 49 347 IPR011009 -
Glsi05g0828 361 PANTHER OS01G0750732 PROTEIN 40 345 - -
Glsi05g0828 361 FunFam serine/threonine-protein kinase PBS1-like 31 141 - -
Glsi05g0828 361 FunFam receptor-like serine/threonine-protein kinase NCRK 142 352 - -
Glsi05g0828 361 Gene3D Phosphorylase Kinase; domain 1 30 141 - -
Glsi05g0828 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Glsi05g0828 361 Gene3D Transferase(Phosphotransferase) domain 1 142 352 - -
Glsi05g0828 361 ProSiteProfiles Protein kinase domain profile. 63 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0828 Glsi-ChrGlsi05 58676572 58679329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0828 46 340 Receptor kinase-like Gene Family AT3G58690 47.333 1.67e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Glsi05g0828 Pkinase 1.9e-49 CL0016