Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0808 ATGTCGGCGCATCGATCGAAGTCGGAGAAGCACGATGCTGCGAAGCAACCCCGGCAAGATCCCTATGAGGTTCTCGGCGTCTCGCGTAGCTCGACAGATCAGGCAATCAAAACCGCTTACCGAAAAATGGCGCTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAAGCAGCTGATATGTTTAAAGAAGTCACATTTTCATATAATATTTTGTCAGATCCTGACAAACGGCGTCAGTATGACTCAGCTGGTTTTGAGGCTGTTGAATCAGATAGTCAAGAATTGGAGTTGGATCTTTCAAGTTTAGGTGCTGTGAATACAATGTTTGCTGCACTTTTTAGTAAACTAGGTGTGCCAATTAAGACAACTGTATCAGCAACTGTTTTGGAAGAGGCACTTAATGGTGTGGTGACCCTTCGCCCACTTCCATTAGGGCAGTCCTTATCTAGAAGGGTTGAGAAGCAATGTGCTCACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACAGGCTGGATTTGTTTGTCGGGTGCAATCGGCTGACAAAAGCAAGTTCAAGTTATTATATTTTGATCAAGAAGGGAATGGTGGATTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACAGGGAAGGTTACCTCCGCTGGAATGTATTTTCTTGGATTTCCTGTTTATCGGCTGGATCAAACAGCAAACTCAATAGCTACTGCTAAGGATCCAGATACATCATTTTTCAGAAAGCTTGATGGGTTCCAACCATGTGAATTAACAGAATTGAAGGCTGGTACCCATGTCTTTGCTGTTTATGGTGACAATTTCTTCAAAAGTGCAAGCTATACAGTAGAAGCTCTATCTGCTGCACCTTTTAGTCAAGAAAAAGAGAGCCTCAGGAATATAGAAGATCAAATTTTATCTAAAAGGGCAGAACTATCCAAATTTGAGAGTGAATACCGAGAGGTTCTGGCTCAATTCACAGAGATGACAGGTAGATATGCACAAGAAATGCAAGTGATTGATGAACTACTTAAGCAAAGAAACGGGATACATGCATCATATACTATTACTCCATTGAAACGTAGTACGAAAAGGCTTGCTAAGAACTTGTGCTAG 1113 0.416 MSAHRSKSEKHDAAKQPRQDPYEVLGVSRSSTDQAIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGVVTLRPLPLGQSLSRRVEKQCAHFYSVTITEEEAQAGFVCRVQSADKSKFKLLYFDQEGNGGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTANSIATAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSASYTVEALSAAPFSQEKESLRNIEDQILSKRAELSKFESEYREVLAQFTEMTGRYAQEMQVIDELLKQRNGIHASYTITPLKRSTKRLAKNLC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0808 370 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 361 - -
Glsi05g0808 370 FunFam Chaperone protein dnaJ 16 4 102 - -
Glsi05g0808 370 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Glsi05g0808 370 SMART dnaj_3 19 77 IPR001623 -
Glsi05g0808 370 Gene3D DnaJ domain 4 103 IPR036869 -
Glsi05g0808 370 Pfam DnaJ domain 20 82 IPR001623 -
Glsi05g0808 370 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Glsi05g0808 370 CDD DnaJ 20 74 IPR001623 -
Glsi05g0808 370 MobiDBLite consensus disorder prediction 1 18 - -
Glsi05g0808 370 Coils Coil 297 317 - -
Glsi05g0808 370 PRINTS DnaJ domain signature 77 96 IPR001623 -
Glsi05g0808 370 PRINTS DnaJ domain signature 57 77 IPR001623 -
Glsi05g0808 370 PRINTS DnaJ domain signature 22 40 IPR001623 -
Glsi05g0808 370 PRINTS DnaJ domain signature 40 55 IPR001623 -
Glsi05g0808 370 MobiDBLite consensus disorder prediction 1 28 - -
Glsi05g0808 370 SUPERFAMILY Chaperone J-domain 17 89 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0808 Glsi-ChrGlsi05 58525480 58529262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0808 22 83 C2H2 Transcription Factor Family AT1G74250 41.791 2.75e-10 60.1