Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0806 ATGGAAAAGGATGCCTCTGATCTTTCTACCTCTACATGGGATAGAAGAGAAAATGGCCAATTTGTAGAGAAGAGGCTCAAGTTATTTGGGTTTGAGTTGAACCCATCTAAGAAGAAGAAGAACAGTGAAGGGTGCAGCATCAAAGAATCCATGGAATCCAGAACTGAGGGTTTTCAGTCGGAATTTAAGTCAGAGCCAAATGAAACAATAAAAGAGTCCATGGAAGGAGATGAAAGTGTGAACTCTTCTATCTCAATTTCTTCATCAGGAGGGGACAAAAAAGCCCAGGAGAAGAGCCCAGAAAGAAGTGCAGATGAGAGAAAGTTCGAGTGTCAATATTGTTTCAAGGAATTCGCAAACTCACAAGCATTAGGAGGCCACCAAAATGCGCACAAGAAAGAAAGAATGAAGAAGAAGAGGCAGCAACTTCAAGCCAGAAAGGCTAGCATAAATTGCTACCTTCAACCTTTCCAAAGCAATAACCAACATGGCTTTGCTTATTATGGCTCTAATAATACTCCATGGTTCTATGATCCTTCTTCCTATAAAAATAACAATTCTGAGTTCACTCTGTATGAAGAATCTGATCAGATTAGCTTCAAATCAAATGAACATCAAGATTCTTCTTCTTGTATGTTCACTTTCTCATCCCTCGCAGATGATAGGCCCAATTTCATCTTCAAGCCTTGCCATTTCGCTGCAGCTTCTTCAAACCAGCAGAGGCATAGTAAATCTTTGGATCTTCAACTAGACCTAACCTTGCAGTCAAATACTAGAAGCTGTAAGAAGGACGTGATTAATTTAGCTTAG 810 0.3988 MEKDASDLSTSTWDRRENGQFVEKRLKLFGFELNPSKKKKNSEGCSIKESMESRTEGFQSEFKSEPNETIKESMEGDESVNSSISISSSGGDKKAQEKSPERSADERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRQQLQARKASINCYLQPFQSNNQHGFAYYGSNNTPWFYDPSSYKNNNSEFTLYEESDQISFKSNEHQDSSSCMFTFSSLADDRPNFIFKPCHFAAASSNQQRHSKSLDLQLDLTLQSNTRSCKKDVINLA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0806 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Glsi05g0806 269 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Glsi05g0806 269 MobiDBLite consensus disorder prediction 33 75 - -
Glsi05g0806 269 MobiDBLite consensus disorder prediction 76 93 - -
Glsi05g0806 269 SUPERFAMILY beta-beta-alpha zinc fingers 105 136 IPR036236 -
Glsi05g0806 269 Gene3D Classic Zinc Finger 86 162 - -
Glsi05g0806 269 MobiDBLite consensus disorder prediction 33 104 - -
Glsi05g0806 269 PANTHER ZINC FINGER PROTEIN 5 17 255 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0806 Glsi-ChrGlsi05 58513959 58514768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0806 107 250 C2H2 Transcription Factor Family AT1G10480 45.806 7.59e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi05g0806 None None None