Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0795 ATGACCATGCCTCGCACGTGCTCCCAGTGTGGCAGCAATGGCCACAACTCCCGCACATGCACCCACGGCGGAAATGATGGCGGCGCCGGCGAGAACGGGATCATGCTATTTGGCGTACGACTCACCGAAGGGAACTCGTTCAGGAAGAGCGCTAGCATGACCAATCTCTCGCAGTACGAGGTTCCGCCTCAGGATTCCAACGCCGACGCTGGTTACGCTTCCGACGACGTGGTTCACGCCTCCGGTCGCAGTCGCGAGCGCAAGAGAGGTGTTCCGTGGACGGAGGAAGAGCATAGGCTATTCTTGCAGGGGCTAGAGAAAGTTGGGAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAAACTCGGACACCAACTCAGGTGGCGAGTCATGCTCAGAAGTACTTCCTCCGCCGCCACAACCAGAATCGAAGACGCCGGAGATCTAGTCTGTTTGACATTACCACCGATACGGTGAAAGAATCGTCTGCGTCAATGGAAGAAGAGCAAGTTCACCAAGAAAGAGCAATACCACCCACACATCCACAATCACATTACGGCAGATTTCTCCCGATGAAGTTAGCAGCTGGAGAGAGATCGGGTAAGCCGATTAGGCCTACGCCGATTCTGCCAGTTCCTCCGTCTTCCAAAATGGCTTCTCTAAATTTGAAAGAGAAAGCTGTCATGGATCCTTTACCATTATCTCTGAAGCTGCCAGCGACGTCAACGTCAAAGGAGCAGTCGCCTGCAGCAAGTAGCCACCCATCGGCGCCGGCTTTTCAGGCTATGTCCGGCAAGTTCAGCAGTAGTGGAGATAACATAATCAGCGTGGCTTGA 840 0.5357 MTMPRTCSQCGSNGHNSRTCTHGGNDGGAGENGIMLFGVRLTEGNSFRKSASMTNLSQYEVPPQDSNADAGYASDDVVHASGRSRERKRGVPWTEEEHRLFLQGLEKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVKESSASMEEEQVHQERAIPPTHPQSHYGRFLPMKLAAGERSGKPIRPTPILPVPPSSKMASLNLKEKAVMDPLPLSLKLPATSTSKEQSPAASSHPSAPAFQAMSGKFSSSGDNIISVA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0795 279 ProSiteProfiles Zinc finger CCHC-type profile. 7 20 IPR001878 GO:0003676|GO:0008270
Glsi05g0795 279 SMART sant 89 139 IPR001005 -
Glsi05g0795 279 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 139 IPR006447 GO:0003677
Glsi05g0795 279 SUPERFAMILY Homeodomain-like 87 140 IPR009057 -
Glsi05g0795 279 ProSiteProfiles SANT domain profile. 88 141 IPR017884 -
Glsi05g0795 279 ProSiteProfiles Myb-like domain profile. 85 137 IPR001005 -
Glsi05g0795 279 PANTHER TRANSCRIPTION FACTOR KUA1 4 245 - -
Glsi05g0795 279 FunFam transcription factor MYB1R1 91 142 - -
Glsi05g0795 279 Pfam Myb-like DNA-binding domain 92 137 IPR001005 -
Glsi05g0795 279 MobiDBLite consensus disorder prediction 239 279 - -
Glsi05g0795 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 141 IPR017930 -
Glsi05g0795 279 Gene3D - 91 142 - -
Glsi05g0795 279 CDD SANT 92 137 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0795 Glsi-ChrGlsi05 58442567 58443610 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi05g0795 Myb_DNA-binding 7.4e-12 CL0123