Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0790 ATGATGGGTGGAGGTGCTCAGAAATTAACAACAAATGATGCCTTACAATATCTCAAGGCAGTCAAGGAAATGTTTCATGATAAGAGGGAAAAGTATGATGATTTTCTGGAAGTCATGAAAAATTTCAAGGCACAAAGGTTTGATCATGCTGTACAACCTTCTTTGCCTCCCCCGTCCCTCCAATTTCAACTTCCTTATTTTTTTATAGCTGTATTTTATTGTGAGAAAAGATATTGGCTTTGTAAGTGGAAATTGATTTATATATATTTTTTATGGATTTGTAGAATTGATACTGCGGGAGTGATAGCAAGAGTTAAGGAACTGTTTAAAGGGCACAAGGATCTAATTTTGGGATTTAACACCTTCTTGCCTAAGGGATATGAAATCACACTTCCATTGGAGGATGAACAACCTCCCCAGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATTAAGACGCGGTTTCAAGGTGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGACCACCAAGACCTTCTTGTTGAGTTTAAGCACTTTCTTCCGGACGCTTCAGCAGCAGCTTCTGCACATTATGCTCAATCTGCTCGGAATTCTATGCTTCGTGACAGGAGCTCTGCAATGCCAACAGTGCGGCAAATGCCTGTTGACAAGAGGGAAAGGACCATGGCTTCACATGATCGTGACCTTAGTGTTGATCGTCCTGATCCTGATCATGAAAGAGGTTTGATGAGGACGGAAAAGGAGCTGAGGAGGCGTGGTGACAAGGAAAAGGACTGTAGAGAAGAGAGTGACAGGAGAGAGCAAGAGCGGGATGATAGAGATTATGAGCATGATAATAGTCGGGACTACAATATGCAGCATTTCCCCAACAAACGGAAATCTGGTTGTAGGGCTGAAAATTCCAGTGCTGAACCTCTGCATCAAGGAGGTGATGCTGATGAAAATTTTGGTCTGCGCCGTATGTCATCCCCTTGTGATGATAAAAGTTCTGTGAAAAGTATGTATAGTCAGGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAATCCTGAGGATTATCAGGAATTTTTGAAGTGTCTCCATATCTATAGCAGGGAAATAATTACCCGACAAGAATTGCACTCATTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAGGGGTTTAATGAATTTTTGGCACGATGTGAGAAGAATGATGGATGCCTTGCTGCTGTCATGAATAAAAAGTCCTTATGGAACGAAGGAAATGCACCAAAACCAATGAAGGAGGACAGGTATAGTGATAAAGATCGTGATTGTCGCAGGGATGATGGGGTTAAAGAAAGGGATCGTGAATACCGAGAAAGGGACAAATCTGCTGCCATTGGCGGCAAGGATGTTTCAGTTCCTAAGATGTCAATTTTTTCCACCAAGGATAAGTATATGGGAAAACCTATAAATGAGCTGGACCTTTCTAATTGTGAGCGATGTACTCCTAGTTATCGTCTCCTACCAAAAAATTACCCAATACCTTTGGCTAGCCATAGAACAGAGCTTGGTGCTGAAGTATTGAATGATCAATGGGTGTCTGTCACCTCAGGAAGTGAAGACTATTCTTTCAAACACATGCGCAAAAACCAGTACGAAGAGAGCTTGTTTAGATGTGAAGATGACAGATTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTAACAACCAAGCGAGTAGAAGAGCTCTTAGAAATGATCAATAATAAAGGAGACAGTCCAATTTGTATTGAGGAGTATTTAACAGCTTTGAACCTAAGGTGCATTGAACGATTGTATGGTGACCATGGGCTTGATGTAATGGATGTGTTAAGAAAGAATGCACCTTTAGCCTTGCCAGTCATATTAATCCGCTTGAAGCAGAAACAGGAAGAATGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCCCTTGATCATCGTAGCTTCTACTTTAAGCAACAAGATACAAAAAGCTTGAGCACAAAAGCCTTACTAGCAGAAATTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGATGACATTCTTCTAGCAATTGCTGCTGGAAATAGACGGTCCATTCTTCCAAATTTGGAATTTGAGTATCCAGATCCAGATATTCATGAAGATCTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGTACAACTGAACAGTTAGATAAAGTTATGAAGATTTGGACAATGTTTATAGAACCCCTTCTTGGTGTTCCTTCTCGACCCCAGGGTGCTGAGGATACGGAAGAGGTTGTCAAGGCCAAGAATAATTCTAATAAAATTGGCACTGCCAGTGTTGCAGAGAGTGATGGTAGTGGTGCTACCGTAATGAATCCTAAACATTTAAATACTTCTAGAAATGAGGATGACAGTATTCCATTAGAACAGTTAAATTCTTGCAAAGCATGGCAAATAAATGGAGATAGTGGTGTCAAAGAAGACAACTGTCTTGTTGCAGACCGTACCACACATAAGACTGAAACTTTGGGCTGTAGTACACAGCATGGTAAAATGCAAATTAGTGCATCCTTGCCTGATGAAGGATCAGGAGTCAATAAGCAAGATCACTCCAATGAACAGTTAGTGAATGCCAATGTCTCCGTGACCTCTGGAATGGAGCACAGTAATGGAAGAACAGGCATTGATGATGCATCAGGGCTTACTACTACTCAACCTAGACCTGTAATTGAAGGAGGACTTGATTTACCTTCATCAGAGGGTGGTGATTCTACTAGACCAGCAACTTCCACAAATGGGGCCCTCACCGAAGGCACCAAAGTTCAAAGATACCAAGAAGAATCTGTTGGACACTTTAAAAGTGAAAGAGAAGAGGGTGAATTATCTCCAAATGGAGATTTTGAGGAGGATAACTTTGCAGTTTATGGAGGTGCTGGTTTGGAGGTGATGAATAAAGGAAAAGACGGTGGTATGAGTCGGCAATACCAAAATAGACATGGGGAAGAAGTTTGCGGTGAGGCAGGAGGGGAAAATGATGCTGATGATGAAGGTGAAGAAAGTCCTCGTAGGTCATTAGAGGACAGTGAGAATGCTTCTGAAAATGGCGATGTTTCTGGAAGTGAGTCTGCTGGTGGGGAGGAGTGTTCTCGAGAAGATCATGAAGATGGGGAACACGATGATCATGATAACAAGGCTGAGAGTGAAGGTGAAGGTGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGATGGAACCTTATTGACATTTTCAGAACGCTTTCTAGTAACAGTAAAGCCTCTGGCAAAGTACATTCCCCCAGTGTTGCATGAGAAAGAAAGGAATTCTCAGGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTCAGGCTTCACCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCATCTGCCGAAAGGAAGTGGAGGGCTTCAAATGATACAAGTTCTACTGATCTATATGGCAGGTTCATGAATGCCCTTTACAATTTACTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACTTTAGACAAGCTGATATACAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCAGGAAATTTTTTTGATATAGTTTATCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCATCTACACCAACCCAATTGTCTATTCAACTGATGGACTATGGACATGATAAGCCTGAATTGACTGCTGTGTCTATGGACCCAAATTTTTCAGCTTATCTGCTCAATGATTTCCTCTCTGTTGTCCCTGACAAAAAGGAGAAGTCTGGAATTTTCTTGAGGAGGAACAAACACAGATATTCATGTGGTGATGAATATTCAAGCCAGGCCTTGGAAGGAATACAAGTTAGTAATGGTCTGGAGTGTAAAATAGCTTGCAATTCATCTAAGATACCGAAGACTTTTTATTTCGAATGA 4206 0.4023 MMGGGAQKLTTNDALQYLKAVKEMFHDKREKYDDFLEVMKNFKAQRFDHAVQPSLPPPSLQFQLPYFFIAVFYCEKRYWLCKWKLIYIYFLWICRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFQDHQDLLVEFKHFLPDASAAASAHYAQSARNSMLRDRSSAMPTVRQMPVDKRERTMASHDRDLSVDRPDPDHERGLMRTEKELRRRGDKEKDCREESDRREQERDDRDYEHDNSRDYNMQHFPNKRKSGCRAENSSAEPLHQGGDADENFGLRRMSSPCDDKSSVKSMYSQEFAFCDKVKEKLRNPEDYQEFLKCLHIYSREIITRQELHSLVGDLLGKYPDLMEGFNEFLARCEKNDGCLAAVMNKKSLWNEGNAPKPMKEDRYSDKDRDCRRDDGVKERDREYRERDKSAAIGGKDVSVPKMSIFSTKDKYMGKPINELDLSNCERCTPSYRLLPKNYPIPLASHRTELGAEVLNDQWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEMINNKGDSPICIEEYLTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILIRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDILLAIAAGNRRSILPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTMFIEPLLGVPSRPQGAEDTEEVVKAKNNSNKIGTASVAESDGSGATVMNPKHLNTSRNEDDSIPLEQLNSCKAWQINGDSGVKEDNCLVADRTTHKTETLGCSTQHGKMQISASLPDEGSGVNKQDHSNEQLVNANVSVTSGMEHSNGRTGIDDASGLTTTQPRPVIEGGLDLPSSEGGDSTRPATSTNGALTEGTKVQRYQEESVGHFKSEREEGELSPNGDFEEDNFAVYGGAGLEVMNKGKDGGMSRQYQNRHGEEVCGEAGGENDADDEGEESPRRSLEDSENASENGDVSGSESAGGEECSREDHEDGEHDDHDNKAESEGEGEGMADANDVEGDGTLLTFSERFLVTVKPLAKYIPPVLHEKERNSQVFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDLYGRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYTYEKSRKPGNFFDIVYHENARVLLHDENIYRIECSSTPTQLSIQLMDYGHDKPELTAVSMDPNFSAYLLNDFLSVVPDKKEKSGIFLRRNKHRYSCGDEYSSQALEGIQVSNGLECKIACNSSKIPKTFYFE 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0790 1401 FunFam Paired amphipathic helix protein SIN3 358 431 - -
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 242 327 - -
Glsi05g0790 1401 ProSiteProfiles PAH domain profile. 142 212 IPR003822 GO:0006355
Glsi05g0790 1401 SMART hdac_interact2seq4b 520 617 IPR013194 -
Glsi05g0790 1401 Pfam Sin3 family co-repressor 522 613 IPR013194 -
Glsi05g0790 1401 Gene3D Paired amphipathic helix 358 431 IPR036600 GO:0006355
Glsi05g0790 1401 PANTHER SIN3B-RELATED 7 1302 IPR039774 GO:0003714
Glsi05g0790 1401 FunFam Paired amphipathic helix SIN3-like protein 141 212 - -
Glsi05g0790 1401 ProSiteProfiles PAH domain profile. 360 429 IPR003822 GO:0006355
Glsi05g0790 1401 SUPERFAMILY PAH2 domain 7 48 IPR036600 GO:0006355
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 984 1001 - -
Glsi05g0790 1401 SUPERFAMILY PAH2 domain 138 211 IPR036600 GO:0006355
Glsi05g0790 1401 Gene3D Paired amphipathic helix 140 213 IPR036600 GO:0006355
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 1043 1121 - -
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 452 486 - -
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 962 983 - -
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 817 836 - -
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 1056 1070 - -
Glsi05g0790 1401 Gene3D Paired amphipathic helix 5 126 IPR036600 GO:0006355
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 226 344 - -
Glsi05g0790 1401 Pfam Paired amphipathic helix repeat 30 123 IPR003822 GO:0006355
Glsi05g0790 1401 Pfam Paired amphipathic helix repeat 165 209 IPR003822 GO:0006355
Glsi05g0790 1401 Pfam Paired amphipathic helix repeat 382 426 IPR003822 GO:0006355
Glsi05g0790 1401 Pfam C-terminal domain of Sin3a protein 1158 1394 IPR031693 -
Glsi05g0790 1401 SUPERFAMILY PAH2 domain 360 427 IPR036600 GO:0006355
Glsi05g0790 1401 ProSiteProfiles PAH domain profile. 7 126 IPR003822 GO:0006355
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 1085 1111 - -
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 447 486 - -
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 924 1010 - -
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 924 946 - -
Glsi05g0790 1401 MobiDBLite consensus disorder prediction 817 844 - -
Glsi05g0790 1401 SUPERFAMILY PAH2 domain 93 125 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0790 Glsi-ChrGlsi05 58387261 58396584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0790 3 161 WRKY Transcription Factor Family AT4G12020 35.220 2.57e-16 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi05g0790 Sin3a_C 8.8e-57 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0790 05 58387261 58396584 Glsi05g0790 05 58387261 58396584 ECH