Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0780 ATGTCGCCGGAAGATGATGCCGTTTTATCAACTCCGGGAGCTTTCAGGCTCCGATGGGACGTGTTCTTGAGCTTCAGAGGTGCGGACACCCGTGAATCTTTCACCAAACCTCTCCACAAGTCCCTCGAATCTCGCGGCGTTCGAGTCTTCATCGACGACGAAGGATTGCATCGCGGTGACGAGATCGCTCCGAGTTTGATTGAAGCCATCGACGATTCGGCCGTTTACATTGTCATCCTCTCTCCCGATTACGCCTCTTCACACTGGTGCCTTGAGGAGCTTGCCAAGATTTGCGAGTGCCGGAGACTGATTCTGCCGGTGTTCTACCACGTCGACCCATCGGATGTCGGAAAACAAAAGGGTCCCTTTGAAAAATCCTTTAAAACCCATGAAAACAGATTTCAGAAAGAAAAGGTAATAAAGTGGAGGAAAGCCATGAAGAAAGTGGGTGGAGTTGCTGGTTGGGTTTTCCAGGAAAACAGGGAAGAAGATAATATAATTCAAATTTTGGTGAAAAGGATTTTAAAAGAACTGAGTAATACTCCAATGGTTGTGGCTGAATTTACCGTTGGACTTCATGATCAAGTTGAGGAAGTGATAAAATTATTAGATGTGAAATCTAATGGGATAAAAGTTCTGGGATTGTTTGGAGTGGGAGGGGTTGGTAAAACAACCCTTGCAAAGGCTCTTTTCAACAGCCTTGTTCCTCATTTTGAGCATCGCAGTTTCATTTCAGGTGTTAGAGAAATTTCATCAAAAGATGGTGGTTTAATCTCTCTACAAGACAGAATAATCGGTGACATTTCCTCTAAACCAGTGGTTCCCATCAATGATCGTGTTTCCGCTATTAAAAGAATAGTTCATGAAAATCGAGTTCTGCTAGTCTTAGATGATGTAGCTGACGTAAACCAGCTTGATAATCTGATTGGCGAAAGGGAATGGTTCTATGAAGGAAGCCGCATCATAATCACCACAAGGGACAGACAAGTTTTGCTTAAAACTCATGTTAATGTCCTGTACGAGGTTAAGGAACTGGGTTCCTCTGAAGCACTAGAACTATTCAGTTACCATGCAATGAGAAGAACGGAACCGGCAGATTATAACTTTATGAATCTGTCAAAACAAATAGTGTCTCTAACAGGAAGATTACCTTTGGCTCTGGAAGTGTTTGGTTCATTGTTGTTTGGGAAGAGAAGGGTAGAGGAATGGGTTGATGCTGTGGAGAAGCTGAAGAAGATTCGTCCTGGGGATCTCCAGGATGTGTTGAAGATAAGTTTTGATGGGTTGGATGAAGAGGAGAAATGCATATTCCTTGACATTGCTCAGAAATTAACAACAAATGATGCCTTACAATATCTCAAGGCAGTCAAGGAAATGTTTCATGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTCATGAAAAATTTCAAGGCACAAAGAATTGATACTGCGGGAGTGATAGCAAGAGTTAAGGAACTGTTTAAAGGGCACAAGGATCTGATTTTGGGATTTAACACCTTGCCTAAGGGATATGAAATCACACTTCCATTGGAGGATGAACAACCTCCCCAGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATTAAGACGCGGTTTCAAGGTGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAAAATGTACAGAAAGGAAAACAAGTCTATCGCCGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGACCACCAAGACCTTCTTGTTGAGTTTAAGCACTTTCTTCCGGACGCTTCAGCAGCAGCTTCTGCACATTATGCTCAATCTGCTCGGAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGCGGCAAATGCCTGTTGACAAGAGGGAAAGTGATGAGGGATCACCTACACCTCAAGTTCCTACATTTGAAGGTCCTATCACTAGGCAAGGGCTAAGGAGATCCAACAAAAATTAG 1986 0.427 MSPEDDAVLSTPGAFRLRWDVFLSFRGADTRESFTKPLHKSLESRGVRVFIDDEGLHRGDEIAPSLIEAIDDSAVYIVILSPDYASSHWCLEELAKICECRRLILPVFYHVDPSDVGKQKGPFEKSFKTHENRFQKEKVIKWRKAMKKVGGVAGWVFQENREEDNIIQILVKRILKELSNTPMVVAEFTVGLHDQVEEVIKLLDVKSNGIKVLGLFGVGGVGKTTLAKALFNSLVPHFEHRSFISGVREISSKDGGLISLQDRIIGDISSKPVVPINDRVSAIKRIVHENRVLLVLDDVADVNQLDNLIGEREWFYEGSRIIITTRDRQVLLKTHVNVLYEVKELGSSEALELFSYHAMRRTEPADYNFMNLSKQIVSLTGRLPLALEVFGSLLFGKRRVEEWVDAVEKLKKIRPGDLQDVLKISFDGLDEEEKCIFLDIAQKLTTNDALQYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILKMYRKENKSIAEVYQEVAALFQDHQDLLVEFKHFLPDASAAASAHYAQSARNSMLRDRSSAMPTVRQMPVDKRESDEGSPTPQVPTFEGPITRQGLRRSNKN 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0780 661 MobiDBLite consensus disorder prediction 611 661 - -
Glsi05g0780 661 Gene3D Paired amphipathic helix 525 598 IPR036600 GO:0006355
Glsi05g0780 661 Gene3D - 345 430 IPR042197 -
Glsi05g0780 661 FunFam Paired amphipathic helix protein Sin3 448 509 - -
Glsi05g0780 661 SMART till_3 18 152 IPR000157 GO:0007165
Glsi05g0780 661 ProSiteProfiles PAH domain profile. 527 597 IPR003822 GO:0006355
Glsi05g0780 661 MobiDBLite consensus disorder prediction 638 661 - -
Glsi05g0780 661 Pfam TIR domain 19 182 IPR000157 GO:0007165
Glsi05g0780 661 Gene3D - 16 174 IPR035897 -
Glsi05g0780 661 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 180 - -
Glsi05g0780 661 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 155 IPR035897 -
Glsi05g0780 661 ProSiteProfiles TIR domain profile. 17 178 IPR000157 GO:0007165
Glsi05g0780 661 SUPERFAMILY PAH2 domain 441 507 IPR036600 GO:0006355
Glsi05g0780 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 440 IPR027417 -
Glsi05g0780 661 Gene3D Paired amphipathic helix 448 509 IPR036600 GO:0006355
Glsi05g0780 661 Pfam Paired amphipathic helix repeat 465 507 IPR003822 GO:0006355
Glsi05g0780 661 Pfam Paired amphipathic helix repeat 550 594 IPR003822 GO:0006355
Glsi05g0780 661 PRINTS Disease resistance protein signature 380 394 - -
Glsi05g0780 661 PRINTS Disease resistance protein signature 212 227 - -
Glsi05g0780 661 PRINTS Disease resistance protein signature 286 300 - -
Glsi05g0780 661 SUPERFAMILY PAH2 domain 523 596 IPR036600 GO:0006355
Glsi05g0780 661 ProSiteProfiles PAH domain profile. 442 512 IPR003822 GO:0006355
Glsi05g0780 661 FunFam Paired amphipathic helix SIN3-like protein 526 597 - -
Glsi05g0780 661 Gene3D - 175 339 IPR027417 -
Glsi05g0780 661 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 444 IPR044974 GO:0006952
Glsi05g0780 661 Pfam NB-ARC domain 194 414 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0780 Glsi-ChrGlsi05 58338777 58341349 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0780 444 546 WRKY Transcription Factor Family AT4G12020 51.923 1.31e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi05g0780 NB-ARC 1.1e-29 CL0023