Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0779 ATGGCTTCACATGATCGTGACCTTAGTGTTGATCGTCCTGATCCTGATCATGAAAGAGGTTTGATGAGGACGGAAAAGGAGCTGAGGAGGCGTGGTGACAAGGAAAAGGACTGTAGAGAAGAGAGTGACAGGAGAGAGCAAGAGCGGGATGATAGAGATTATGAGCATGATAATAGTCGGGACTACAATATGCAGCATTTCCCCAACAAACGGAAATCTGGTTGTAGGGCTGAAAATTCCAGTGCTGAACCTCTGCATCAAGGAGGTGATGCTGATGAAAATTTTGGTCTGCGCCGTATGTCATCCCCTTGTGATGATAAAAGTTCTGTGAAAAGTATGTATAGTCAGGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAATCCTGAGGATTATCAGGAATTTTTGAAGTGTCTCCATATCTATAGCAGGGAAATAATTACCCGACAAGAATTGCACTCATTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAGGGGTTTAATGAATTTTTGGCACGATGTGAGAAGAATGATGGATGCCTTGCTGCTGTCATGAATAAAAAGTCCTTATGGAACGAAGGAAATGCACCAAAACCAATGAAGGAGGACAGGTATAGTGATAAAGATCGTGATTGTCGCAGGGATGATGGGGTTAAAGAAAGGGATCGTGAATACCGAGAAAGGGACAAATCTGCTGCCATTGGCGGCAAGGATGTTTCAGTTCCTAAGATGTCAATTTTTTCCACCAAGGATAAGTATATGGGAAAACCTATAAATGAGCTGGACCTTTCTAATTGTGAGCGATATTCTCTTGCTGATTATGTGTCATGTGCATTATTTGTGCTCACACAGTACCCAATACCTTTGGCTAGCCATAGAACAGAGCTTGGTGCTGAAGTATTGAATGATCAATGGGTGTCTGTCACCTCAGGAAGTGAAGACTATTCTTTCAAACACATGCGCAAAAACCAGTACGAAGAGAGCTTGTTTAGATGTGAAGATGACAGATTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTAACAACCAAGCGAGTAGAAGAGCTCTTAGAAATGATCAATAATAAAGGAGACAGTCCAATTTGTATTGAGGAGTATTTAACAGCTTTGAACCTAAGGTGCATTGAACGATTGTATGGTGACCATGGGCTTGATGTAATGGATGTGTTAAGAAAGAATGCACCTTTAGCCTTGCCAGTCATATTAATCCGCTTGAAGCAGAAACAGGAAGAATGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCCCTTAATCATCGTAGCTTCTACTTTAAGCAACAAGATACAAAAAGCTTGAGCACAAAAGCCTTACTAGCAGAAATTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGATGACATTCTTCTAGCAATTGCTGCTGGAAATAGACGGTCCATTCTTCCAAATTTGGAATTTGAGTATCCAGATCCAGATATTCATGAAGATCTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGTACAACTGAACAGTTAGATAAAGTTATGAAGATTTGGACAATGTTTATAGAACCCCTTCTTGGTGTTCCTTCTCGACCCCAGGGTGCTGAGGATACGGAAGAGGTTGTCAAGGCCAAGAATAATTCTAATAAAATTGGCACTGCCAGTGTTGCAGAGAGTGATGGTAGTGGTGCTACCGTAATGAATCCTAAACATTTAAATACTTCTAGAAATGAGGATGACAGTATTCCATTAGAACAGTTAAATTCTTGCAAAGCATGGCAAATAAATGGAGATAGTGGTGTCAAAGAAGACAACTGTCTTGTTGCAGACCGTACCACACATAAGACTGAAACTTTGGGCTGTAGTACACAGCATGGTAAAATGCAAATTAGTGCATCCTTGCCTGATGAAGGATCAGGAGTCAATAAGCAAGATCACTCCAATGAACAGTTAGTGAATGCCAATGTCTCCGTGACCTCTGGAATGGAGCACAGTAATGGAAGAACAGGCATTGATGATGCATCAGGAGGACTTGATTTACCTTCATCAGAGGGTGGTGATTCTACTAGACCAGCAACTTCCACAAATGGGGCCCTCACCGAAGGCACCAAAGTTCAAAGATACCAAGAAGAATCTGTTGGACACTTTAAAAGTGAAAGAGAAGAGGGTGAATTATCTCCAAATGGAGATTTTGAGGAGGATAACTTTGCAGTTTATGGAGGTGCTGGTTTGGAGGTGATGAATAAAGGAAAAGACGGTGGTATGAGTCGGCAATACCAAAATAGACATGGGGAAGAAGTTTGCGGTGAGGCAGGAGGGGAAAATGATGCTGATGATGAAGGTGAAGAAAGTCCTCGTAGGTCATTAGAGGACAGTGAGAATGCTTCTGAAAATGGCGATGTTTCTGGAAGTGAGTCTGCTGGTGGGGAGGAGTGTTCTCGAGAAGATCATGAAGATGGGGAACACGATGATCATGATAACAAGGCTGAGAGTGAAGGTGAAGGTGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGACGGAACCTTATTGACATTTTCAGAACGCTTTCTAGTAACAGTAAAGCCTCTGGCAAAGTACATTCCCCCAGTGTTGCATGAGAAAGAAAGGAATTCTCAGGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTCAGGCTTCACCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCATCTGCTGAAAGGAAGTGGAGGGCTTCAAATGATACAAGTTCTACTGATCTATATGGCAGGTTCATGAATGCCCTTTACAATTTACTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACTTTAGACAAGCTGATATACAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCAGGAAAATTTTTTGATATAGTTTATCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCATCTACACCAACCCAATTGTCTATTCAACTGATGGACTATGGACATGATAAGCCTGAATTGACTGCTGTGTCTATGGACCCAAATTTTTCAGCTTATCTGCTCAATGATTTCCTCTCTGTTGTCCCTGACAAAAAGGAGAAGTCTGGAATTTTCTTGAGGAGGAACAAACACAGATATTCATGTGGTGATGAATATTCAAGCCAGGCCTTGGAAGGAATACAAGTTAGTAATGGTCTGGAGTGTAAAATAGCTTGCAATTCATCTAAGGTTTCATATCTCATGCCATGA 3429 0.4042 MASHDRDLSVDRPDPDHERGLMRTEKELRRRGDKEKDCREESDRREQERDDRDYEHDNSRDYNMQHFPNKRKSGCRAENSSAEPLHQGGDADENFGLRRMSSPCDDKSSVKSMYSQEFAFCDKVKEKLRNPEDYQEFLKCLHIYSREIITRQELHSLVGDLLGKYPDLMEGFNEFLARCEKNDGCLAAVMNKKSLWNEGNAPKPMKEDRYSDKDRDCRRDDGVKERDREYRERDKSAAIGGKDVSVPKMSIFSTKDKYMGKPINELDLSNCERYSLADYVSCALFVLTQYPIPLASHRTELGAEVLNDQWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEMINNKGDSPICIEEYLTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILIRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLNHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDILLAIAAGNRRSILPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTMFIEPLLGVPSRPQGAEDTEEVVKAKNNSNKIGTASVAESDGSGATVMNPKHLNTSRNEDDSIPLEQLNSCKAWQINGDSGVKEDNCLVADRTTHKTETLGCSTQHGKMQISASLPDEGSGVNKQDHSNEQLVNANVSVTSGMEHSNGRTGIDDASGGLDLPSSEGGDSTRPATSTNGALTEGTKVQRYQEESVGHFKSEREEGELSPNGDFEEDNFAVYGGAGLEVMNKGKDGGMSRQYQNRHGEEVCGEAGGENDADDEGEESPRRSLEDSENASENGDVSGSESAGGEECSREDHEDGEHDDHDNKAESEGEGEGMADANDVEGDGTLLTFSERFLVTVKPLAKYIPPVLHEKERNSQVFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDLYGRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYTYEKSRKPGKFFDIVYHENARVLLHDENIYRIECSSTPTQLSIQLMDYGHDKPELTAVSMDPNFSAYLLNDFLSVVPDKKEKSGIFLRRNKHRYSCGDEYSSQALEGIQVSNGLECKIACNSSKVSYLMP 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0779 1142 SUPERFAMILY PAH2 domain 110 177 IPR036600 GO:0006355
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 572 591 - -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 679 753 - -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 705 726 - -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 727 744 - -
Glsi05g0779 1142 PANTHER SIN3B-RELATED 117 1045 IPR039774 GO:0003714
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 1 108 - -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 572 599 - -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 786 864 - -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 202 236 - -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 799 813 - -
Glsi05g0779 1142 FunFam Paired amphipathic helix protein SIN3 108 181 - -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 197 236 - -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 1 77 - -
Glsi05g0779 1142 Pfam C-terminal domain of Sin3a protein 901 1139 IPR031693 -
Glsi05g0779 1142 MobiDBLite consensus disorder prediction 828 854 - -
Glsi05g0779 1142 Pfam Sin3 family co-repressor 289 368 IPR013194 -
Glsi05g0779 1142 Gene3D Paired amphipathic helix 108 181 IPR036600 GO:0006355
Glsi05g0779 1142 Pfam Paired amphipathic helix repeat 132 176 IPR003822 GO:0006355
Glsi05g0779 1142 ProSiteProfiles PAH domain profile. 110 179 IPR003822 GO:0006355
Glsi05g0779 1142 SMART hdac_interact2seq4b 281 372 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0779 Glsi-ChrGlsi05 58324136 58332399 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi05g0779 Sin3a_C 1.6e-57 No_clan