Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0771 ATGGATCCGGCTGCTATGATGAACGAGGGTTCCTTCGCGAATAGGGGTGTTAATACGGCGCCGTATAACTTGGCGGATATCTGGCAGTTCCCGATGAATGGCGGTGCGGGTCTCGGAGATTCCGGAGGCGGGTTGGGACTGAGAAGGCCACAGTTCGGGCATAATTTGGGGCAGTTTGGGGATTTTACGGGTCCGAATCGGGATGTACCGGGCAATGATCAAATCAGCTCGGAGCAGAGAGGGAACGAAGGGGTCAATAAGAAGAGGCGCGATTCAGAGGACGAGTCGGCCAAGGGCGTCTCCACCAGCAATGGCGGCAATGGCGTGAATGATGGTGATGGAAAACGGCTTAAAACTTCAGGGAATAGGAACGACAGCCGTGAGACTAAAGCTGAAGCAGAACCCAGTTCAGGAAAGCCTGCGGAACACAGTAATCAGCCACCTCCTGAGCCTCCTAAGCAAGATTACATTCATGTACGCGCGAGAAGGGGTCAAGCTACTGATAGCCACAGCCTAGCAGAAAGAGCTAGAAGGGAAAAGATAAGTGAAAGGATGAAAATTCTTCAGGATTTAGTCCCTGGTTGTAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCACTACAGCGCCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTAAATTCTAGATTGAACCCTGCCATTGAAGTTTTTCCTCCTAAAGAATTTGGTCAAACATTTGACACAACCGGCATGGCCTTTGGTTCACAAGCTTCAAGAGAGTACAGCCGGGGTTCGTCACCAGAATGGTTACATATGCAGGTAGGAGGTGGTTTTGAAAGAACAACATAG 858 0.4872 MDPAAMMNEGSFANRGVNTAPYNLADIWQFPMNGGAGLGDSGGGLGLRRPQFGHNLGQFGDFTGPNRDVPGNDQISSEQRGNEGVNKKRRDSEDESAKGVSTSNGGNGVNDGDGKRLKTSGNRNDSRETKAEAEPSSGKPAEHSNQPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNPAIEVFPPKEFGQTFDTTGMAFGSQASREYSRGSSPEWLHMQVGGGFERTT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0771 285 MobiDBLite consensus disorder prediction 49 155 - -
Glsi05g0771 285 Gene3D - 162 238 IPR036638 GO:0046983
Glsi05g0771 285 SMART finulus 171 221 IPR011598 GO:0046983
Glsi05g0771 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
Glsi05g0771 285 Coils Coil 212 232 - -
Glsi05g0771 285 MobiDBLite consensus disorder prediction 116 137 - -
Glsi05g0771 285 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Glsi05g0771 285 FunFam Basic helix-loop-helix transcription factor 162 234 - -
Glsi05g0771 285 MobiDBLite consensus disorder prediction 82 97 - -
Glsi05g0771 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 233 IPR036638 GO:0046983
Glsi05g0771 285 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 259 IPR024097 GO:0006355
Glsi05g0771 285 CDD bHLH_AtBPE_like 155 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0771 Glsi-ChrGlsi05 58198712 58200976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0771 1 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.184 1.23e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g0771 HLH 2.3e-08 No_clan