Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0753 ATGCATTGCCTTACTACGTCTTCCTCTCACTACCCCTTGGCGCATTTCAACTCTCAACTGTTTCCCTCTGTTTTCTTTGTCTTTCATTCAAGAAGGCCGAATAGAAGGCAAAAGTTCAAGGCTTTGAATCTTGTTGCGGTTAAGGAGAATGATTCGCTGTGGGGTTGCTCGGGTTCTTTCAAGAAAGGGTATTTTCACAACGGTTTGTATTGGGGTTGTTCTGGGTTTTTGAGGAGTTGTAAAGATGCGGACACTGACGGAGATTTCTCTCTGGAGGCGGAGATTTCTGAGTTCATAAAAAATTCCAAGAACCTAGAAGCCTTTCCTACCGAGAAAGACTTGGTTGATGCTGGGAGGATGGATTTAGTGCACGCTATTTCTAAGAAAGGAGGTTCGCTTGCGTTTGGGTGGGATTGGGATAAAGATGGGAGCACTAGAGTTCGGGGCAATGAAAGTGGGGTTGCTTCTTCTTCTTCAGCTATCTCGTCCAATAGACCAGTAGAAACAAAAGCTGAGGAGTCTGGCATTGAGGGTATATTAAGTAGACTGAAGAAAGACAGAGAGAAAGCCCTTCTCTCTGGATTTAGAGAGAAGGAAGACAGAGTTACACTTGGAAAGACAAATTACAACGAAATAATAAGCAGCCTCCAGGAGCTAGAGTCAGAGGTATCCTCTATATATCACCCATTGTGGTCTAGCATTGATGCAGTTGCAATACAAACGACATCAACATCTATTATGGTTATTGCTACATACGTCCTTGTAGTCCATCTTGTCAAAATAGTTACGTGCTTGGCACCTTCATTCTATATCAAGATGCCCATTAACGATGCTTTGTCTCTTTCCCTCATTATGAATTGCAAAGGCGCGGTGGATCACCAGAAAAGCTTCTCTGATGATCTAAAGAATGCTCGGAACAGACTGCGTTCAATACTAGCTAAGTTAGCAGTCTTAGAAGGAAAGATGGAACTGGCGATAAAAAATGGACACAAGATAGTGGAAGACAAGCAGAGGAGGATTGATTGTTCTCATAGAGCCTCGCCAGTTCTTAAGACCACTTATGTACTTTGGCCTACTAAAGCTTCAGAAGTGCTTCTAGCAGGATCATTTGATGGTTGGTCCACCCAGAGAAAGATGGAGAAGACAAGTGCAGGTATCTTTTCTGTGTGCCTGCAGTTGTGTCCTGGAAAATACGAGATCAAGTTCATAGTGGACGGTCAATGGAAGACTGATCCCTTACGCCCTATTGTTAACAATAGTGGCTACGAGAATAATATCCTCGTCGTCTCATGA 1293 0.4331 MHCLTTSSSHYPLAHFNSQLFPSVFFVFHSRRPNRRQKFKALNLVAVKENDSLWGCSGSFKKGYFHNGLYWGCSGFLRSCKDADTDGDFSLEAEISEFIKNSKNLEAFPTEKDLVDAGRMDLVHAISKKGGSLAFGWDWDKDGSTRVRGNESGVASSSSAISSNRPVETKAEESGIEGILSRLKKDREKALLSGFREKEDRVTLGKTNYNEIISSLQELESEVSSIYHPLWSSIDAVAIQTTSTSIMVIATYVLVVHLVKIVTCLAPSFYIKMPINDALSLSLIMNCKGAVDHQKSFSDDLKNARNRLRSILAKLAVLEGKMELAIKNGHKIVEDKQRRIDCSHRASPVLKTTYVLWPTKASEVLLAGSFDGWSTQRKMEKTSAGIFSVCLQLCPGKYEIKFIVDGQWKTDPLRPIVNNSGYENNILVVS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0753 430 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 17 202 - -
Glsi05g0753 430 MobiDBLite consensus disorder prediction 148 167 - -
Glsi05g0753 430 MobiDBLite consensus disorder prediction 149 167 - -
Glsi05g0753 430 SUPERFAMILY E set domains 352 429 IPR014756 -
Glsi05g0753 430 Gene3D Immunoglobulins 350 430 IPR013783 -
Glsi05g0753 430 Coils Coil 301 321 - -
Glsi05g0753 430 CDD E_set_AMPKbeta_like_N 351 429 - -
Glsi05g0753 430 Pfam Glycogen recognition site of AMP-activated protein kinase 353 429 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0753 Glsi-ChrGlsi05 58016735 58020077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0753 341 429 Protein tyrosine phosphatase (PTP) family AT3G01510 32.967 4.66e-07 50.1