Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0751 ATGGCGGGCGGAAAAGTTTATGGGTCTCCAAACATGGCAGTTTTGCTCCAAAACGAAAGGCTTCCTTGTTCTTCTGAAGTTCTTGAGTCTCTGTGGGCTCAGACCCCTAACCCCACTTTTCCAGGTTCAAAAGCTATGGTGAATTTTGAGAATGTTAGTGGGTGCACAATGACAGATAGGCCGTTTCTGCAAGCTCTGGACAAAGAAGAGAACGTGGAAGATGACTATGATGCGTGCTTTCATCAACCGGGGAAGAAAAGGCGGCTCACGAGCGAACAAGTTCAGTTTCTTGAAAAGAACTTTGAGGTAGAAAACAAGCTCGAACCCGAAAGAAAAGTCCAACTTGCCAAGGAGCTTGGGTTGCAGCCAAGGCAAGTTGCTATATGGTTCCAAAACCGAAGGGCTAGGTACAAGACCAAACAGCTCGAAAAAGACTACGGCACATTGAAAGCTAGCTTTGACAAACTCAAGGGTAACTATGACAATCTTCTTCACGACACCCAGAAGTTAAAAGAAGAGGTGAATTCCCTGAAGAACAGATTGAGCGCCAGAGAGAGAGAGAAAGAAGAGAACTCTGAAAAATCCCCTGATCCTGATAATGCTGGTGGTGTCAATTCACCGCATAATAATAATAATAATAAAGAGCCTCCTCCGGGTTCGATCTCAAATGCAGTTTCTGAAAATGGGTCCAAAGTTGTGCCATCACTCCCAATGCTAATCTGCAAACAGGAAGATGCCAATTCGGCTAAAAGCGATGTGTTTGATTCGGACAGCCCACATTACACTGACGGCAATCATTCCTCATTTCTGGAGCCTGCAGATTCCTCCCATGCCTTCGAACCAGACCACTCCGATTTCTCACAGGATGAAGAAGATAACCTCAGCCAGAACCTCTTGACCCTCCCTTGCTTGCCCAAGGTTGAAGATGGCTGCTACGATGACCCTCCTGATAGTTCTTGTAATTTTGGGTTCCCGGTTGAAGATCAAACCTTTTGTTTTTGGCCTTACTGA 1011 0.457 MAGGKVYGSPNMAVLLQNERLPCSSEVLESLWAQTPNPTFPGSKAMVNFENVSGCTMTDRPFLQALDKEENVEDDYDACFHQPGKKRRLTSEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKTKQLEKDYGTLKASFDKLKGNYDNLLHDTQKLKEEVNSLKNRLSAREREKEENSEKSPDPDNAGGVNSPHNNNNNKEPPPGSISNAVSENGSKVVPSLPMLICKQEDANSAKSDVFDSDSPHYTDGNHSSFLEPADSSHAFEPDHSDFSQDEEDNLSQNLLTLPCLPKVEDGCYDDPPDSSCNFGFPVEDQTFCFWPY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0751 336 Gene3D - 78 141 - -
Glsi05g0751 336 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Glsi05g0751 336 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Glsi05g0751 336 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Glsi05g0751 336 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Glsi05g0751 336 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Glsi05g0751 336 SUPERFAMILY Homeodomain-like 74 142 IPR009057 -
Glsi05g0751 336 CDD homeodomain 83 141 IPR001356 GO:0003677
Glsi05g0751 336 Pfam Homeobox associated leucine zipper 140 181 IPR003106 GO:0006355|GO:0043565
Glsi05g0751 336 Gene3D - 142 187 - -
Glsi05g0751 336 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 223 IPR045224 GO:0003700
Glsi05g0751 336 MobiDBLite consensus disorder prediction 198 228 - -
Glsi05g0751 336 Coils Coil 153 194 - -
Glsi05g0751 336 MobiDBLite consensus disorder prediction 276 290 - -
Glsi05g0751 336 FunFam Homeobox-leucine zipper protein HAT5 78 142 - -
Glsi05g0751 336 SMART HOX_1 82 144 IPR001356 GO:0003677
Glsi05g0751 336 MobiDBLite consensus disorder prediction 250 293 - -
Glsi05g0751 336 MobiDBLite consensus disorder prediction 178 228 - -
Glsi05g0751 336 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0751 Glsi-ChrGlsi05 58002462 58004211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0751 42 252 Homeobox Transcription Factor Family AT3G01470 41.704 9.64e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi05g0751 Homeodomain 1.1e-16 CL0123