Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0746 ATGGAATCACAATCGGGTCTTATAGACCAATCACTCAATGATAGTTACTCCTACTATGTTCGCGAGGCACTCGATGAATTGCCTGATAGTTTTACCATCACCGACCCTTCAATCCCTGGTCATCCAATTGTGTTTGCAAGCGGGGAGTTCTTGAAAATGTCTGGGTATTCCAAGGATGAGGTAATTGGCAAGAATGGTAAGATTTTTCAAGGACCCGGGACTTGCAGAAGATCGGTAATGGAAATTCGAGAGGCAATACGGGAAGGGAGAACAATTCAGATCAACTTGTTGAATTATCGTAGAGATGGGAGACCCTTTTGGATGTTGTTTCACATGAGCCCTGTTTTTAGCAATAAGGATGGGAGAGTGATGCACTTCGTGGCAGTTCAGGTACCAATATCAAGAAAACGAAGGTGCTCGGGATGTGGGTTTGGGAGAGATGGAGTTAATGTGTGCGAGGATGGTTCTAGGGTGCGGGATTTTGTTCTCGGATCTTGTCGGAGAGAGGTGTGCTCGGATTCTTCGTTGGAACTTGGTCGTGTTTTGTCCCTGGATCAAGGGTTAGAACATGATGCTAGAGAATCAGAGAGTGAAGAGCCGTGTGAGGCAAGTGATGTTGAGAAGAGAAGAGCTACGGCTGCCATGGATAACATCTTCTCTGTACTAATCCGCTATAGCGAGTTAACTGGCAGATTGGTGTGTAGAAAGAGATGCAGCATGCCTGACGCGGGTCTTCTTAGCTCTTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTGATCCACGCTTACCTGACATGCCTATTGTGTATGCCAGTGATGCATTCTTGAAATTGACAGGCTATGCAAGAGATGAAGTGTTGGGGCGAAATTGTAGATTTCTAAGTGGGGTGGATACCGAAGCGTCAACTTTATGCCTGATAAGGGAAAGCATTAAAAGTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCTTTTTGGAATCTTCTACACATATCACCTGCTCGTGATGCTTCCGGCAAGGTAGCATACTTTGTGGGTGTTCAAATAGAAGAAGGCTGTGAAAGGCAGGAGAAACTGGGTTTGAACCCTGAGGTGAGGCAGCGTAGTGTGGTTGGTGCAGTCAAGGTTGCTGTGAGGAGTTTATCAATAAATGCCGGATCTTCAAAGTCATAG 1206 0.4478 MESQSGLIDQSLNDSYSYYVREALDELPDSFTITDPSIPGHPIVFASGEFLKMSGYSKDEVIGKNGKIFQGPGTCRRSVMEIREAIREGRTIQINLLNYRRDGRPFWMLFHMSPVFSNKDGRVMHFVAVQVPISRKRRCSGCGFGRDGVNVCEDGSRVRDFVLGSCRREVCSDSSLELGRVLSLDQGLEHDARESESEEPCEASDVEKRRATAAMDNIFSVLIRYSELTGRLVCRKRCSMPDAGLLSSSLIISLGRIKQSFVLTDPRLPDMPIVYASDAFLKLTGYARDEVLGRNCRFLSGVDTEASTLCLIRESIKSEQPCTVRILNYRKDKSSFWNLLHISPARDASGKVAYFVGVQIEEGCERQEKLGLNPEVRQRSVVGAVKVAVRSLSINAGSSKS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0746 401 ProSiteProfiles PAC domain profile. 320 374 IPR000700 -
Glsi05g0746 401 SMART pac_2 323 362 IPR001610 -
Glsi05g0746 401 SMART pac_2 93 136 IPR001610 -
Glsi05g0746 401 SMART pas_2 18 91 IPR000014 -
Glsi05g0746 401 SMART pas_2 248 321 IPR000014 -
Glsi05g0746 401 Gene3D PAS domain 260 400 - -
Glsi05g0746 401 ProSiteProfiles PAS repeat profile. 273 295 IPR000014 -
Glsi05g0746 401 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Glsi05g0746 401 FunFam protein TWIN LOV 1 260 396 - -
Glsi05g0746 401 NCBIfam PAS domain S-box protein 22 129 IPR000014 -
Glsi05g0746 401 NCBIfam PAS domain S-box protein 273 359 IPR000014 -
Glsi05g0746 401 SUPERFAMILY PYP-like sensor domain (PAS domain) 261 359 IPR035965 -
Glsi05g0746 401 Pfam PAS domain 29 134 IPR000014 -
Glsi05g0746 401 Pfam PAS domain 269 359 IPR000014 -
Glsi05g0746 401 CDD PAS 269 358 IPR000014 -
Glsi05g0746 401 Gene3D PAS domain 18 139 - -
Glsi05g0746 401 PANTHER PROTEIN TWIN LOV 1 1 391 - -
Glsi05g0746 401 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Glsi05g0746 401 CDD PAS 27 133 IPR000014 -
Glsi05g0746 401 FunFam Protein TWIN LOV 1 isoform D 30 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0746 Glsi-ChrGlsi05 57937689 57941272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0746 250 392 AGC Kinase Gene Family AT5G58140 45.033 6.65e-37 140