Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0744 ATGGGATTAAGTTCTGAGAATGGTAAGGTGGAGTCTTGGGATGTGTGCAAATCAAAGGGGAGGAAGAAGAAGAAGAAAGACGATGGGGTTGTAGAAGAGGAAGAGACCGGGTGTTGGGTTACGCTGAGGTTCATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTTAGCGGCACCAGCACTCATTATGCTGAAAGTAAATCAACAAATGATACTAGTAGAGACCAACCAACAGCTCCAGTAGTCTCTTCTACAACCGTTAGTAATGCAGAAAGCAATTCGTCCACCTCCAAACTTGAAGAAGAACTTAAAATTGCTTCCAGGCTGCGAAAATTCTCCTTTAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCTGAGAGTCTTCTTGGTGAAGGTGGGTTTGGTTGTGTATTCAAGGGATGGATTGAAGAAAATGGAACTGCCCCAGTGAAACCTGGCACAGGGCTTACTGTTGCTGTAAAAACCCTGAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTATCTTGGTGACCTAGTTCATCCAAATCTTGTTAAACTTGTGGGTTACTGCATTGAAGAAGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGAAGCCTGGAAAACCACCTATTTAGGAGATCCCTGCCTCTTCCGTGGTCCATTAGGATGAAAATAGCACTTGGAGCTGCAAAGGGTCTGGCTTTTCTTCATGAGGAAGCTGAACGGCCTGTAATATATAGGGATTTTAAAACTTCCAATATACTATTAGATGCAGATTACAATGCCAAGCTCTCAGATTTTGGGCTTGCCAAAGATGGTCCAGAGGGTGATAAAACCCATGTGTCTACTCGAGTAATGGGAACCTACGGTTATGCAGCACCAGAATACGTTATGACAGGACACCTTACATCGAGAAGTGACGTGTACAGTTTCGGAGTGGTACTACTTGAGATGTTGACTGGCAGAAGATCTATGGACAAGAACCGACCTAATGGTGAACATAACCTTGTTGAATGGGCTCGACCACACCTAGGGGAGAGAAGAAGGTTCTACAGGCTGATAGACCCTCGGCTGGAAGGTCACTTCTCCATAAAAGGAGCTCAAAAAGCTGCTCAATTGGCTGCTCACTGCCTTAGTAGAGATCCCAAAGCCAGACCCCTAATGAGTGAAGTTGTAGAAGCTTTGAAGCCTCTGCCAAACCTTAAGGACATGGCAAGCTCATCATATTATTTTCAGACAATGCAAGCTGACCGATTTGGAGCCAGCCCAAATACCAGAAATGGGCGCACACAGGGAGGATTGCTTACCAGAAATGGGCAGCGGAGCCTTTCAATACCACATGGTACTCATGCTTCTCCATATCACCATCAGTTTCCACAACAATCACCAAAACCCAAAGGCAAAGCATAG 1446 0.4509 MGLSSENGKVESWDVCKSKGRKKKKKDDGVVEEEETGCWVTLRFIGSCISSRSKVDSSVSGTSTHYAESKSTNDTSRDQPTAPVVSSTTVSNAESNSSTSKLEEELKIASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHPNLVKLVGYCIEEDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFGASPNTRNGRTQGGLLTRNGQRSLSIPHGTHASPYHHQFPQQSPKPKGKA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0744 481 SUPERFAMILY Protein kinase-like (PK-like) 105 407 IPR011009 -
Glsi05g0744 481 ProSitePatterns Protein kinases ATP-binding region signature. 133 165 IPR017441 GO:0005524
Glsi05g0744 481 MobiDBLite consensus disorder prediction 53 99 - -
Glsi05g0744 481 Gene3D Transferase(Phosphotransferase) domain 1 213 428 - -
Glsi05g0744 481 FunFam Serine/threonine-protein kinase BIK1 94 212 - -
Glsi05g0744 481 Gene3D Phosphorylase Kinase; domain 1 86 212 - -
Glsi05g0744 481 FunFam Probable serine/threonine-protein kinase PBL8 213 428 - -
Glsi05g0744 481 PANTHER OS01G0588500 PROTEIN-RELATED 89 410 - -
Glsi05g0744 481 ProSiteProfiles Protein kinase domain profile. 127 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0744 481 MobiDBLite consensus disorder prediction 53 100 - -
Glsi05g0744 481 MobiDBLite consensus disorder prediction 432 481 - -
Glsi05g0744 481 Pfam Protein tyrosine and serine/threonine kinase 131 407 IPR001245 GO:0004672|GO:0006468
Glsi05g0744 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Glsi05g0744 481 MobiDBLite consensus disorder prediction 432 459 - -
Glsi05g0744 481 CDD STKc_IRAK 133 410 - -
Glsi05g0744 481 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0744 Glsi-ChrGlsi05 57911629 57915589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0744 74 407 Glycoside Hydrolase AT3G07070 54.599 2.58e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi05g0744 PK_Tyr_Ser-Thr 4.9e-46 CL0016