Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0740 ATGGAACAAGATGGCAAAGCATCTTTCATTAGTGTACTCCATAAATTTCTGATTTCTAGTTTTCTGTTTTCTTGTTTGAGTAAAATGGAGCTTGCAAATGTAAAAACTGAATTAAGCCCCAGTAGTCATAGGTTGTTCGTGATAGAAGGTGGGAACATTGCCACTAAGTTTGTCAAGAGACGGCGAAGAAATGCATCTATGGCAATTCTAGGGGGCAGTGAGCAGCAAGAGCAGCAGCCACAGGGTGACCCTTCAACCACCGCCGCCACTACCACAGCGAAGAGAAGCTCAAGATTCCGCGGAGTTAGCAGACATAAATGGACAGGGCGATTTGAAGCTCATTTATGGGACAAAGGGACGTGGAATCCAACTCAAAAGAAGAAAGGGAAGCAAGGAGCTTATAATGATGAAGAAGCTGCAGCTAGAGCATATGATTTGGCTGCACTCAAGTACTGGGGAACTTCTACCGTGACAAACTTCCCTGCATCTGATTATGAGAAAGAGATTGAGGCTATGAGCACTATGACAAAAGAAGAATATATTGCTTCTTTAAAAAGGAGAAGCAGTGGTTTTTCCAGAGGTGTGTCAAAGTACAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATAGGGAGAGTGTTTGGCAACAAGTACCTGTACCTTGGGACTTACGGTACACAGGAAGAGGCAGCTCGTGCATATGACATCGCAGCTATAGAATACAGAGGCATAAATGCAGTAACAAACTTTGACTTGAGTAGGTATATTAGATGGCTAAGACCAATATCTCATTCCGCTGCCTCTCAAGAACTAAAACCAAGCACAGATTTTCAGCTCATCACAAACTCTAGCCTCACCCAAACCAGAGGAATCACTGAGCTATCCAATTTCAATCACCATTCATTGGTCCCCATAGGTGACTTGGATATTACCAAGAAGGAAGAGATTCCCCAGCATGTGACCCCTTTAAGTTCTAGCACCAAGGCATCGTCTTCTCCTACAGCACTAGGACTTCTCCTTAAATCCTCAGTGTTTAGAGAGCTAGTGCAGAAGAACCTGAATTCCATTAATGAAAAAGGTGAAGAAGATGAATTGGAAAACCCACAAGAAAGAAGCGATGGGGTTTCAGGGACTTCTGACAAAGAAATGGCCAGAATCTCTTACTTGTGCTCTTCCAATGGAGACAGATTCTGGTGA 1209 0.4359 MEQDGKASFISVLHKFLISSFLFSCLSKMELANVKTELSPSSHRLFVIEGGNIATKFVKRRRRNASMAILGGSEQQEQQPQGDPSTTAATTTAKRSSRFRGVSRHKWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTVTNFPASDYEKEIEAMSTMTKEEYIASLKRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSRYIRWLRPISHSAASQELKPSTDFQLITNSSLTQTRGITELSNFNHHSLVPIGDLDITKKEEIPQHVTPLSSSTKASSSPTALGLLLKSSVFRELVQKNLNSINEKGEEDELENPQERSDGVSGTSDKEMARISYLCSSNGDRFW 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0740 402 CDD AP2 196 257 IPR001471 GO:0003700|GO:0006355
Glsi05g0740 402 MobiDBLite consensus disorder prediction 360 382 - -
Glsi05g0740 402 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 318 - -
Glsi05g0740 402 MobiDBLite consensus disorder prediction 360 384 - -
Glsi05g0740 402 SMART rav1_2 197 261 IPR001471 GO:0003700|GO:0006355
Glsi05g0740 402 SMART rav1_2 98 167 IPR001471 GO:0003700|GO:0006355
Glsi05g0740 402 SUPERFAMILY DNA-binding domain 97 163 IPR016177 GO:0003677
Glsi05g0740 402 FunFam AP2-like ethylene-responsive transcription factor 196 257 - -
Glsi05g0740 402 Gene3D AP2/ERF domain 97 162 IPR036955 GO:0003700|GO:0006355
Glsi05g0740 402 Gene3D AP2/ERF domain 196 257 IPR036955 GO:0003700|GO:0006355
Glsi05g0740 402 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Glsi05g0740 402 PRINTS Ethylene responsive element binding protein signature 237 257 IPR001471 GO:0003700|GO:0006355
Glsi05g0740 402 Pfam AP2 domain 97 153 IPR001471 GO:0003700|GO:0006355
Glsi05g0740 402 Pfam AP2 domain 196 247 IPR001471 GO:0003700|GO:0006355
Glsi05g0740 402 ProSiteProfiles AP2/ERF domain profile. 98 161 IPR001471 GO:0003700|GO:0006355
Glsi05g0740 402 MobiDBLite consensus disorder prediction 71 102 - -
Glsi05g0740 402 MobiDBLite consensus disorder prediction 71 97 - -
Glsi05g0740 402 ProSiteProfiles AP2/ERF domain profile. 197 255 IPR001471 GO:0003700|GO:0006355
Glsi05g0740 402 SUPERFAMILY DNA-binding domain 196 257 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0740 Glsi-ChrGlsi05 57872340 57878101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0740 139 268 AP2-EREBP Transcription Factor Family AT5G57390 31.469 1.33e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi05g0740 AP2 1.6e-08 CL0081