Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0732 ATGGGTAACTGCCTAGATCGTTCTGCTAAAATTGATACAGCACAAAGCTCCCAAACCACTTCTGGAATTTCAACAACTACTCCTTCATTTGCTCCTTCCATTTTATCCGTTCCATCACACAGCGAGAAACGCAATGCCTCCTCAAGTCTTCCTACGCCAAGATCCGAGGGTGAAATCTTGTCTTCTCCAAATCTGAAAGCTTTCACCTTCAATGAACTAAAGAATTCCACTAAGAATTTTCGTCCTGAAAATCTTATTGGAGAAGGAGGATTTGGTTATGTCTATAAGGGATGGATTGATCATCATTCATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTGAAGAAGCTCAAACCTGGAGGTTTTCAAGGTCATAAGGAGTGGCTGACTGAAGTTAACTACCTTGGGCAACTCCACCATCGTAATCTGGTTAAATTAATTGGGTACTGCTCGGAGGGGGAGAACCAGCTATTGGTGTATGAGTTTATGTCCAAAGGGAGCTTAGAGAACCATCTATTTCGAAGAGGACCTCAGCCACTATCCTGGGCGGTGAGAATGAAAGTAGCCGTTGGTGCAGCCAGAGGGCTTTCTTTTCTTCATAATGCCGAATCACAAATCATATACCGTGATTTCAAAGCTTCTAATATCCTACTAGATGCTGAGTTCAGTGCTAAACTTTCTGATTTTGGGTTAGCTAAGGAGGGTCCTACAGGTGACAGAACTCATGTGTCTACTCAGGTCATGGGTACTCAAGGATATGCAGCACCCGAATATATTGCAACAGGTCGGCTCACGGCAAAAAGTGATGTATATAGCTTTGGAGTGGTGTTGCTTGAACTTCTATGTGGGAGACGTGCTGTTGATAAAACGAAACTAGGGGTAGAGCAGAAACTGGTAGAGTGGGCAAAACCCTATTTAGGTGACAAACGAGGATTATTTCGGATTATGGACACCATGTTGGGAGGTCAATACCACCAAAAAGCAGCCTACATGGCTGCTAATCTTGCTCTACAATGCCTTAATAGTGAAGCCAAGGCCAGGCCTCCCATGACTGAGGTTTTAGCAACTCTCCAACAGATTATTGAAGCCCCCAAAATGTGCACGCCCATCAGAAGAGCAGAAAGCCCACCTGAGATATGTCAGGGCGGTGTCCTCTGGAGTTCCCCGGAACACTTCATTAGGGCAGTGGGGCTTAAAGCTTCCGGGTATGGTGATGATGCCCTGCTGAAGTGTTTGGGGGAACTCTGGGTGCCATCTGACACACTATTAATTACAACTTACAACCCAAGCCAAGGTTTTTAA 1311 0.4493 MGNCLDRSAKIDTAQSSQTTSGISTTTPSFAPSILSVPSHSEKRNASSSLPTPRSEGEILSSPNLKAFTFNELKNSTKNFRPENLIGEGGFGYVYKGWIDHHSFTASKPGSGMVVAVKKLKPGGFQGHKEWLTEVNYLGQLHHRNLVKLIGYCSEGENQLLVYEFMSKGSLENHLFRRGPQPLSWAVRMKVAVGAARGLSFLHNAESQIIYRDFKASNILLDAEFSAKLSDFGLAKEGPTGDRTHVSTQVMGTQGYAAPEYIATGRLTAKSDVYSFGVVLLELLCGRRAVDKTKLGVEQKLVEWAKPYLGDKRGLFRIMDTMLGGQYHQKAAYMAANLALQCLNSEAKARPPMTEVLATLQQIIEAPKMCTPIRRAESPPEICQGGVLWSSPEHFIRAVGLKASGYGDDALLKCLGELWVPSDTLLITTYNPSQGF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0732 436 Gene3D Phosphorylase Kinase; domain 1 56 165 - -
Glsi05g0732 436 SUPERFAMILY Protein kinase-like (PK-like) 57 369 IPR011009 -
Glsi05g0732 436 Gene3D Transferase(Phosphotransferase) domain 1 166 375 - -
Glsi05g0732 436 ProSitePatterns Protein kinases ATP-binding region signature. 86 119 IPR017441 GO:0005524
Glsi05g0732 436 MobiDBLite consensus disorder prediction 1 61 - -
Glsi05g0732 436 PANTHER OS01G0588500 PROTEIN-RELATED 41 363 - -
Glsi05g0732 436 MobiDBLite consensus disorder prediction 9 61 - -
Glsi05g0732 436 FunFam Serine/threonine-protein kinase PBS1 166 376 - -
Glsi05g0732 436 CDD STKc_IRAK 86 363 - -
Glsi05g0732 436 Pfam Protein tyrosine and serine/threonine kinase 84 359 IPR001245 GO:0004672|GO:0006468
Glsi05g0732 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Glsi05g0732 436 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0732 436 FunFam Serine/threonine-protein kinase BIK1 47 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0732 Glsi-ChrGlsi05 57796007 57803843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0732 56 381 Glycoside Hydrolase AT3G07070 50.456 9.89e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi05g0732 PK_Tyr_Ser-Thr 5.9e-46 CL0016