Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0720 ATGAAGCAGCAGCAGCAACAGGGCAACGAAGAATCCAAGAAGAAGGAGCGTCACATTGTTTCGTGGACTCAAGAGGAGGATGATATACTTAGAGAACAGATTAGCATCCATGGAACTGAAAATTGGGCAATTATTGCATCTAAGTTCAAGGATAAATCCACAAGACAGTGCAGGAGAAGATGGTACACATACTTAAATTCTGATTTCAAGAAAGGAGGATGGTCACCGGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGCAACAGATGGACAGAAATAGCAAAGGTGGTGTCAGGCAGAACGGATAACGCTGTGAAAAACCGGTTCACCACATTGTGCAAAAAGAAAGCAAAATATGAAGCCTTGGCAAAAGAGAACAGCACTTCATACATCAATTCAAATAACAAAAGGATTACTTTCCAACATGTTTACAGTACAGATGCAACACCAGAGGCCGCAGCAACAATTAAGAAGATGAGGAGGACCCATATCCCTGATGCTGCAGAAAAGATCAACTTTGGAGACAGATCACATAAACAATGTGGAACACCAATTAGTCAGCAGTCAAGAGCACCATTTGCAGTATTAGCTCAAAACTTCCACAATGTCTACAACTTGCCAGACCAGCATCATGTCTGCAATATCAAGTTCAGCAGTTATGCCCAGAATAACAAGGTTCAAGAAACATTCCTCAAAAAGGATGATCCAAAGATAAGTGTGTTGATGAAGCAAGCAGAATTACTAAGTTCGCTAGCAATTAAAGTTAATACAGAGAACATGGACCAGAGTCTTGAGAATGCATGGAAGGTTCTTCAAGAATTTCTGAACCAAACCAAAGATTCAGATCTTCCCAAATATAAGATCCCGGATTTACAGCTTGTAGATCTTAAAAATATGGTGAAGGACTTAAAGAGTGGTAATGGGGGAAGCCAGCCTTGTAGGAGGCAATTGGAACTATATGAAGACTCTCCATGCAGTTCTGATTACAGTACAGGATCAACTTTCCTGTCTCATGCAGCTGGTGATAATTTGGAACATTCACTGCAGCAAGATGTTGGAACTGAAAGGACGTCTACTGAAATTGGAGATAAAACAGGACTCAGTGAATGTGAGAAACAGGTGCTTTCTGCTTCAACTGGGGATCAAGGTAATATAATCCTGTCTCATTTTAAGGAGTTCAGTTCGCCTCTTCAGGTTACCCCTTTGTTCAGATCCTTGGCTGCAGGAATTCCCAGCCCACAGTTTTCCGAAAGTGAAAGGAATTTTCTAATGAAAACACTCGGAGTGGAATCCCCATCCCTGAACCTAAGTGCCAACCCCTCACAACCACCACCCTGCAAAAGAGCCCTGCTCCACAGTCTATAA 1374 0.4185 MKQQQQQGNEESKKKERHIVSWTQEEDDILREQISIHGTENWAIIASKFKDKSTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKKAKYEALAKENSTSYINSNNKRITFQHVYSTDATPEAAATIKKMRRTHIPDAAEKINFGDRSHKQCGTPISQQSRAPFAVLAQNFHNVYNLPDQHHVCNIKFSSYAQNNKVQETFLKKDDPKISVLMKQAELLSSLAIKVNTENMDQSLENAWKVLQEFLNQTKDSDLPKYKIPDLQLVDLKNMVKDLKSGNGGSQPCRRQLELYEDSPCSSDYSTGSTFLSHAAGDNLEHSLQQDVGTERTSTEIGDKTGLSECEKQVLSASTGDQGNIILSHFKEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGVESPSLNLSANPSQPPPCKRALLHSL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0720 457 CDD SANT 74 115 IPR001005 -
Glsi05g0720 457 ProSiteProfiles Myb-like domain profile. 21 65 IPR001005 -
Glsi05g0720 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Glsi05g0720 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Glsi05g0720 457 FunFam Transcription factor MYB124 73 141 - -
Glsi05g0720 457 CDD SANT 21 65 IPR001005 -
Glsi05g0720 457 FunFam Transcription factor MYB124 14 70 - -
Glsi05g0720 457 Gene3D - 73 144 - -
Glsi05g0720 457 SMART sant 18 67 IPR001005 -
Glsi05g0720 457 SMART sant 70 118 IPR001005 -
Glsi05g0720 457 Pfam Myb-like DNA-binding domain 22 82 - -
Glsi05g0720 457 SUPERFAMILY Homeodomain-like 19 112 IPR009057 -
Glsi05g0720 457 Gene3D - 9 70 - -
Glsi05g0720 457 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Glsi05g0720 457 PANTHER MYB PROTEIN-RELATED 21 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0720 Glsi-ChrGlsi05 57591594 57596272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0720 10 318 MYB Transcription Factor Family AT2G02820 62.300 6.01e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi05g0720 Myb_DNA-bind_6 6.6e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0720 05 57591594 57596272 Glsi05g0720 05 57591594 57596272 ECH