LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g0718	ATGGGGGCATCCACGGCAGTAGTCTGTTTAGCCTTCGAGCATCGGCAATCTTACTCTTCTCTTCTCACTCAACATGACGATCAGCTCTTGATTGTGATAGGCCAAGAGATTATCAATGAGATGGCTTTCTTCCCTGCAAATTTCATGCTTCAAACCCCTCACCCAGAAGACCATCAACCTCCACCTTCTCTCAGCTCACTTCTACCCTCGTGCGCTCCTCAAGATTATCATGGGGGAGCATCCTTCCTTGGTAAGAGATGTATGTCATTTTCAGGAATTGAACTGGGAGAAGAAGCTAATGCTGAGGAAGATTTGTCTGATGATGGGTCACAGGTAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAATAAGCTTGAACCAGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGGCTTCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGGAGGGCTAGGTGGAAGACCAAGCAGCTGGAGAAAGACTACGATCTTCTTAAAAGACAATATGAAGCTATTAAGGCAGATAACGATGCACTTCAAGCTCAAAACCAAAAACTTCAGGCAGAGATATTGGCACTGAAAAGCAGAGAGCCAACTGAATCTATCAACCTCAACAAGGAAACAGAGGGATCCAGCAGCAATCGAAGTGAGAACAGCTCAGACATTAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTGTCCCCACAAAACACCAGCAGAAACCTCTTTCCATCTTCTTCAGCTAGGCCTTCAGGAGTGGCTCAGCTTCTACAAGCTTCTTCAAGGCCAGAACACCAATGCCAGAAGGTTGATCAGATGGGTAAAGATGAGAGCTTAACCAACATGTTTTGTGGCATGGATGATCAATCTGGGCTCTGGCCCTGGTTGGAGCAGCAGCATTTCAACTGA	960	0.4656	MGASTAVVCLAFEHRQSYSSLLTQHDDQLLIVIGQEIINEMAFFPANFMLQTPHPEDHQPPPSLSSLLPSCAPQDYHGGASFLGKRCMSFSGIELGEEANAEEDLSDDGSQVGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQAEILALKSREPTESINLNKETEGSSSNRSENSSDIKLDISRTPAIDSPLSPQNTSRNLFPSSSARPSGVAQLLQASSRPEHQCQKVDQMGKDESLTNMFCGMDDQSGLWPWLEQQHFN	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g0718	319	MobiDBLite	consensus disorder prediction	218	239	-	-
	Glsi05g0718	319	PRINTS	Lambda-repressor HTH signature	150	166	IPR000047	GO:0003677
	Glsi05g0718	319	PRINTS	Lambda-repressor HTH signature	141	150	IPR000047	GO:0003677
	Glsi05g0718	319	SUPERFAMILY	Homeodomain-like	108	172	IPR009057	-
	Glsi05g0718	319	MobiDBLite	consensus disorder prediction	246	282	-	-
	Glsi05g0718	319	ProSitePatterns	'Homeobox' domain signature.	145	168	IPR017970	GO:0000981\|GO:0006355
	Glsi05g0718	319	SMART	HOX_1	113	174	IPR001356	GO:0003677
	Glsi05g0718	319	Pfam	Homeobox associated leucine zipper	170	210	IPR003106	GO:0006355\|GO:0043565
	Glsi05g0718	319	Pfam	Homeodomain	115	168	IPR001356	GO:0003677
	Glsi05g0718	319	CDD	homeodomain	115	171	IPR001356	GO:0003677
	Glsi05g0718	319	MobiDBLite	consensus disorder prediction	215	282	-	-
	Glsi05g0718	319	ProSiteProfiles	'Homeobox' domain profile.	110	170	IPR001356	GO:0003677
	Glsi05g0718	319	FunFam	Homeobox-leucine zipper protein ATHB-13	107	174	-	-
	Glsi05g0718	319	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	102	290	IPR045224	GO:0003700
	Glsi05g0718	319	MobiDBLite	consensus disorder prediction	99	118	-	-
	Glsi05g0718	319	Coils	Coil	162	210	-	-
	Glsi05g0718	319	Gene3D	-	107	176	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g0718	Glsi-ChrGlsi05	57565617	57568620	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g0718	39	319	Homeobox Transcription Factor Family	AT1G69780	63.636	1.14e-119	344

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Glsi05g0718		Homeodomain	1.7e-15	CL0123