Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi05g0707 | ATGGCTGATCCTCAGAGAACTACTCCTGGCGAGAGGGATATCGAGCAGGCGATTACATGTATTAAGAAAGGCGCATATCTGCTCAAGTATGGACGCAGAGGAAAGCCAAAGTTCTGCCCATTTAAGCTTTCCAATGATGAGTCTTTGCTCATATGGTACTCTGGCAAGGAAGAGAAACATGTTAAGCTCAGTACTATTTCAAAGATCATTCCTGGGCAGCGAACAGCAACATTTCAGCGGTACCCTCGGCCTGAAAAGGAATATCAATCATTTTCTCTTATCTACAATGACAGGTCCTTGGATTTGATATGTAAGGACAAGGAAGAAGCTGAAATCTGGTTTGTCGGTCTTAAGGCATTAATCACTCAAGGTAACATTCGCAAATGTAGACCTGAATCAAGATGTGACAGTTTGTATTCTGATAGTTCACAATTTCGCACACGAAGAATTACTCCATCAGTTACACCGTTGGACCCAGGAGATACTAAAGAGGTTCCTTTAGACAGTAGTTCACAAATTAGATTGGGAAAGGCTTTCTCTGAAATAATTTCACATACTGCAGTTGGCAAGAATTTAAGTCTAGCTGAATCAGCTGCAAATTCCTCTTTATCCTCTGGGTCTGTGGATAACTCAAACAATCGAAATTCTACAGTTGAGGCATTTCGAGTTAGTGTATCAAGTGGTGTAAGTTCATCCAGCCAGGGTTCTTACCTCGAAGATTTTGATGCTTTATGTGATGTTTTCTTTTGGGGAGAAGGTATTGGTAATGGATTGCTTGGTGGTGGATTACATAGAATTGGAACATTATCTAGTTCTGATATGGATGCATATCTCCTCAAGGCATTGGAATCAAAAGTATTTCTAGATGTTCACAGTATTGCTTGTGGTTACAAACATGCCGTCCTAGTTAGTAAGCAAGGAGAGATATTTAGCTGGGGGGAGGAATCAGGAGGTAGACTTGGGCATGGTGTAGAAGCAGATGTTTCCCACCCTAAGCTCATTGACACTCTTAATGGCTTGACTATTGAATTTGTAGCATGTGGGGAATATCATACTTGTGCTGTTACATTCTCTGGGGATCTTTATACTTGGGGTGATGGTACTCACAATTTTGGTTTACTTGGACATGGAAGTGAAGTCAGTCATTGGATTCCTAAGAAAGTAAGTGGCAGCATGGAGGGTGTGCATGTATCATATGTGTCTTGTGGACCTTGGCACACAGCTATTGTTACATTAGCTGGCCAGTTATTCACATTTGGGGATGGATCTTTTGGTGCCTTGGGCCATGGTGATCATAGTAGCACAAATATTCCTCGTGAAGTAGAAGCTTTGAAGGGGTTGAGAACAACTAGAGTTTCCTGTAGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATGAATGAATATACAGAATCTTCTGCCCTTTCTCCCATAGGGAAACTGTTCACCTGGGGGGATGGAGATAAAGGCCGGCTTGGACATGGCGATGAGGAACCTAGACTAGCTCCTGAGTGCGTAACTACATTGGATAATGAAAATATTTGTAGAGTCGCTTGTGGCCATAATCTTACAATTGCTTTGACGACCTCAGGACTTGTATATACAATGGGCAGTACTGCATATGGACAACTTGGCAATTCTGCTGCTGATGGAAGAGTCCCTACACTTGTTGAAGATATAATTTCTAACAGTGTTATAGAAGATATTGCATGTGGTTCTTATCATATTGCAGTCCTGACTTCCAAGAAAGAGGTTTACACCTGGGGAAAGGGTTCAAATGGTCAGTTAGGCCATGGAGATAACAATCACCGAAGTAAACCTACACTTGTTGAGCTCTTAAAAGATAAGCAAGTGAAGAGTGTCGCTTGTGGTTCAAACTTTACTGCTGTTGTATGCCTTCATAAATGGGTTTCTAGTGCTGACCAGTCTCTGTGTTCTGGTTGTCATAATCCATTTGGATTCATAAGGAAACGTCATAATTGTTACAACTGCGGACTTGTTTTTTGCAAAGCATGCAGCAATAGAAAATCAACAAAAGCTTCCCTTGCTCCAAATGCCAATAAGCCATACCGGGTTTGTGATGATTGTTATTGTAAACTGAAGAAAGCCACAGAATCTGTCACCTGGATGAAAACTCTTACCTCAAAAAGTGAAAGTACGCATGACACTAGAGCTGCTAAATTACAGGGAACAATATCAAGACTTTCATCTCTTAATTCTATTGTTCAAGCAGAAAGCAAACACTCAAAGTTTCCAGAATCACGTGATACCCATGTTTTTCCATCTTTTAATGGTAAACTACAGTTGGTGGGTTTCAATTCTTCAAGAACATTATGTTCTCTTGCTGAAACATCAAAGAAGCCCCTTTCAGCTTCTGTGCCTGCAACGAGAATGACTTCAAATGCAACATCTCCCATTTCAGCAAATTCAAGCTCACTACTGTGTTGTGAAGATATACCTGATGATTCGAAGTACAGAAATGATATGCCTAATCAAGAAGTTATAACTTTAAGGGCACAGGTTGAAGATCTTACTCGTAAATCCAAACAGCTTGAAGCTGAACTTGAGAGGAAATCAAAGCAATTGAAAGAGTTGACTGCAGTAGCTGCAGATGAAGCTGCAAAGTGTAAATCTGCCAAAGAGGTTATAAAGTCATTGACTGCTCAGTTGAAGGAGATGGTGCAAAGGCAACCAGAAGAACATAATGCTGACTTCAGTGCTGACTTCCATGCTGGAAATACTAATAATATTAATCAATCCTTAGATGAGAGCCATATAACAAACATTGTCACCCCTGAAACTGATTCAATGAGCAATGCAGCAAATCGAATATTGCCTAATGGTACCAAAACGCATAGTGGAAAGGCAGAGTGGGTGGTGCATGATGAACCAGGTGTATACATAACTTTGTCCTCTTTGCCAGGTGGTGGTATTGAACTTAAACACGTTCGCTTCAGGAACCTGATATGCCTTTGGCGTTTAAGTGTAGTTATCACCAGTTTCAAGTTTCAACTCAAAAGCCATATTGTTGATTGTGCTCCTATCAGTGACCTTCATCGGAGACATTACACAGAAGAGCAAGCCGAGAAGTGGTGGGCTGAAAATGGAGCCAAAGTATTGGAGCGGCACAATGTAGTTTCTTCATAG | 3147 | 0.4112 | MADPQRTTPGERDIEQAITCIKKGAYLLKYGRRGKPKFCPFKLSNDESLLIWYSGKEEKHVKLSTISKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFVGLKALITQGNIRKCRPESRCDSLYSDSSQFRTRRITPSVTPLDPGDTKEVPLDSSSQIRLGKAFSEIISHTAVGKNLSLAESAANSSLSSGSVDNSNNRNSTVEAFRVSVSSGVSSSSQGSYLEDFDALCDVFFWGEGIGNGLLGGGLHRIGTLSSSDMDAYLLKALESKVFLDVHSIACGYKHAVLVSKQGEIFSWGEESGGRLGHGVEADVSHPKLIDTLNGLTIEFVACGEYHTCAVTFSGDLYTWGDGTHNFGLLGHGSEVSHWIPKKVSGSMEGVHVSYVSCGPWHTAIVTLAGQLFTFGDGSFGALGHGDHSSTNIPREVEALKGLRTTRVSCSVWHTAAVVEVMNEYTESSALSPIGKLFTWGDGDKGRLGHGDEEPRLAPECVTTLDNENICRVACGHNLTIALTTSGLVYTMGSTAYGQLGNSAADGRVPTLVEDIISNSVIEDIACGSYHIAVLTSKKEVYTWGKGSNGQLGHGDNNHRSKPTLVELLKDKQVKSVACGSNFTAVVCLHKWVSSADQSLCSGCHNPFGFIRKRHNCYNCGLVFCKACSNRKSTKASLAPNANKPYRVCDDCYCKLKKATESVTWMKTLTSKSESTHDTRAAKLQGTISRLSSLNSIVQAESKHSKFPESRDTHVFPSFNGKLQLVGFNSSRTLCSLAETSKKPLSASVPATRMTSNATSPISANSSSLLCCEDIPDDSKYRNDMPNQEVITLRAQVEDLTRKSKQLEAELERKSKQLKELTAVAADEAAKCKSAKEVIKSLTAQLKEMVQRQPEEHNADFSADFHAGNTNNINQSLDESHITNIVTPETDSMSNAANRILPNGTKTHSGKAEWVVHDEPGVYITLSSLPGGGIELKHVRFRNLICLWRLSVVITSFKFQLKSHIVDCAPISDLHRRHYTEEQAEKWWAENGAKVLERHNVVSS | 1048 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi05g0707 | 1048 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 57 | 892 | - | - | |
| Glsi05g0707 | 1048 | ProSiteProfiles | BRX domain profile. | 956 | 1044 | IPR013591 | - | |
| Glsi05g0707 | 1048 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 583 | 634 | IPR000408 | - | |
| Glsi05g0707 | 1048 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 293 | 303 | IPR000408 | - | |
| Glsi05g0707 | 1048 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 639 | 701 | IPR017455 | - | |
| Glsi05g0707 | 1048 | CDD | PH_PLC_plant-like | 12 | 122 | - | - | |
| Glsi05g0707 | 1048 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 307 | 358 | IPR000408 | - | |
| Glsi05g0707 | 1048 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 531 | 582 | IPR000408 | - | |
| Glsi05g0707 | 1048 | SUPERFAMILY | FYVE/PHD zinc finger | 635 | 711 | IPR011011 | - | |
| Glsi05g0707 | 1048 | Pfam | Transcription factor BRX N-terminal domain | 871 | 896 | IPR027988 | - | |
| Glsi05g0707 | 1048 | Gene3D | - | 13 | 129 | IPR011993 | - | |
| Glsi05g0707 | 1048 | Pfam | FYVE zinc finger | 635 | 701 | IPR000306 | GO:0046872 | |
| Glsi05g0707 | 1048 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 648 | 708 | IPR013083 | - | |
| Glsi05g0707 | 1048 | Coils | Coil | 834 | 896 | - | - | |
| Glsi05g0707 | 1048 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 216 | 467 | - | - | |
| Glsi05g0707 | 1048 | PRINTS | Chromosome condensation regulator RCC1 signature | 359 | 375 | IPR000408 | - | |
| Glsi05g0707 | 1048 | PRINTS | Chromosome condensation regulator RCC1 signature | 400 | 416 | IPR000408 | - | |
| Glsi05g0707 | 1048 | PRINTS | Chromosome condensation regulator RCC1 signature | 309 | 325 | IPR000408 | - | |
| Glsi05g0707 | 1048 | PRINTS | Chromosome condensation regulator RCC1 signature | 416 | 430 | IPR000408 | - | |
| Glsi05g0707 | 1048 | PRINTS | Chromosome condensation regulator RCC1 signature | 520 | 538 | IPR000408 | - | |
| Glsi05g0707 | 1048 | PRINTS | Chromosome condensation regulator RCC1 signature | 578 | 599 | IPR000408 | - | |
| Glsi05g0707 | 1048 | SUPERFAMILY | PH domain-like | 13 | 121 | - | - | |
| Glsi05g0707 | 1048 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 479 | 530 | IPR000408 | - | |
| Glsi05g0707 | 1048 | SMART | fyve_4 | 633 | 702 | IPR000306 | GO:0046872 | |
| Glsi05g0707 | 1048 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 414 | 465 | IPR000408 | - | |
| Glsi05g0707 | 1048 | Pfam | Pleckstrin homology domain | 15 | 121 | IPR001849 | - | |
| Glsi05g0707 | 1048 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 569 | 579 | IPR000408 | - | |
| Glsi05g0707 | 1048 | Gene3D | - | 166 | 368 | IPR009091 | - | |
| Glsi05g0707 | 1048 | Gene3D | - | 369 | 469 | IPR009091 | - | |
| Glsi05g0707 | 1048 | Gene3D | - | 470 | 647 | IPR009091 | - | |
| Glsi05g0707 | 1048 | SUPERFAMILY | RCC1/BLIP-II | 245 | 636 | IPR009091 | - | |
| Glsi05g0707 | 1048 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 359 | 413 | IPR000408 | - | |
| Glsi05g0707 | 1048 | CDD | FYVE_like_SF | 645 | 697 | - | - | |
| Glsi05g0707 | 1048 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 414 | 462 | IPR000408 | - | |
| Glsi05g0707 | 1048 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 358 | 409 | IPR000408 | - | |
| Glsi05g0707 | 1048 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 307 | 355 | IPR000408 | - | |
| Glsi05g0707 | 1048 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 530 | 579 | IPR000408 | - | |
| Glsi05g0707 | 1048 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 479 | 527 | IPR000408 | - | |
| Glsi05g0707 | 1048 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 584 | 631 | IPR000408 | - | |
| Glsi05g0707 | 1048 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 955 | 986 | IPR013591 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi05g0707 | Glsi-ChrGlsi05 | 57465425 | 57477295 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi05g0707 | 923 | 1045 | Major Intrinsic Protein MIP | AT1G31880 | 29.032 | 5.30e-08 | 54.3 |