Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0691 ATGGACTTGACAGATACTCAAACCCCACCGACCCAACCCTCAAATTCCTCCAAGTCTTTATCTTTCATCAACGGCTCGCTCAAGCGCCCCCACCAATCCGCCGTAGTCCCACCGCCACAGCCGCTGCCCATGGTGGTTGTTTCCTACAAGGAATGCCTTAAGAACCATGCTGCCACCATGGGTGGCCACGCGCTTGATGGCTGTGGTGAGTTCATGCCCTCGCCTAACTTCAACCCCATTGACCCACACTCCCTTAAATGCGCCGCGTGCGGTTGCCACCGGAACTTCCACCGCCGTGACCCACAAGATCACTTCAACAACCCCAACTTCCTCACCTGCTTCCACTCGCCGTCGTCGGCGGCGAACCCCCTACCGCCGCTAGCTCACCGGGTATTAAGCACAAGCACTAGCCCCAGCTTGAGTCGTAGTCCGAGCCCGAGTCCGAGTCCGATTTCAAGTTCTTCCCCGCCGCCACTGTCCCATTTTCCACCTTCCTCGTACTACTCATCGGCACCACATATGCTCTTAGCTCTCGGCACCCCCTATTCAGGACCGTCTGATCATGATCAGCACCGGAGCTTCAATTCTACGGCGATGAAGACGGAAAACCCAGGTGGGAAAAGGAGGTGTAGAACCAAATTCAGCCAAGAACAGAAGGAGAAGATGTATTTGTTCTCAGAGAAATTGGGGTGGAAAATGCAGAAAGGGGATGGTAGATTGGTGGAGGAATTCTGCAACGAGGTTGGTGTTTCTAGAGGGGTTTTCAAGGTTTGGATGCACAACAACAAGAACACTTTCAGGAAGAGATCAGAGATTGGCAATACCGATAATGATCAAAAAACAAACGGGGATCATAATGATGATGAGAATGACAATGGTGAAAGAAGAGAAGGTGGGCTTGATAGTGATATTAATCATCTTCCTAATGAAGGTAGCTGTGTCAATAATCTTCATGCTTGTGTTAATGGGTCGTCTTCTTAA 981 0.5087 MDLTDTQTPPTQPSNSSKSLSFINGSLKRPHQSAVVPPPQPLPMVVVSYKECLKNHAATMGGHALDGCGEFMPSPNFNPIDPHSLKCAACGCHRNFHRRDPQDHFNNPNFLTCFHSPSSAANPLPPLAHRVLSTSTSPSLSRSPSPSPSPISSSSPPPLSHFPPSSYYSSAPHMLLALGTPYSGPSDHDQHRSFNSTAMKTENPGGKRRCRTKFSQEQKEKMYLFSEKLGWKMQKGDGRLVEEFCNEVGVSRGVFKVWMHNNKNTFRKRSEIGNTDNDQKTNGDHNDDENDNGERREGGLDSDINHLPNEGSCVNNLHACVNGSSS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0691 326 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 100 IPR006456 -
Glsi05g0691 326 MobiDBLite consensus disorder prediction 186 202 - -
Glsi05g0691 326 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 49 100 IPR006456 -
Glsi05g0691 326 MobiDBLite consensus disorder prediction 268 303 - -
Glsi05g0691 326 MobiDBLite consensus disorder prediction 268 308 - -
Glsi05g0691 326 FunFam Zinc-finger homeodomain protein 2 194 268 - -
Glsi05g0691 326 MobiDBLite consensus disorder prediction 179 212 - -
Glsi05g0691 326 NCBIfam homeobox domain, ZF-HD class 207 264 IPR006455 -
Glsi05g0691 326 SUPERFAMILY Homeodomain-like 200 268 IPR009057 -
Glsi05g0691 326 Gene3D - 192 268 - -
Glsi05g0691 326 MobiDBLite consensus disorder prediction 125 159 - -
Glsi05g0691 326 Pfam ZF-HD protein dimerisation region 47 101 IPR006456 -
Glsi05g0691 326 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 265 - -
Glsi05g0691 326 MobiDBLite consensus disorder prediction 1 23 - -
Glsi05g0691 326 MobiDBLite consensus disorder prediction 143 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0691 Glsi-ChrGlsi05 57355923 57356903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0691 47 266 ZF-HD Transcription Factor Family AT1G69600 50.222 9.66e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi05g0691 ZF-HD_dimer 6.5e-28 No_clan