Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi05g0688 | ATGAGCGATCATTTGGTGTTGTTAGTTGATCGTCTGGTACGCCCTGTGACCGTTGAGTCGCTGACGCAGCCGGCTCAGTTGCCTTCTGACCCGTCTCTGGGGGATGGGTCCGTGGATGCGGCGGGCCCCTCTGGTGCGGCACCGCCTGCGGACGATGGCGCTGGGTCGGAGCTTGATGGGGGGTGTAATGAGGATGAGCCGCTGATCCAGGCCGCAGAATGTCGCATTTGTCAGGAGGAGGACAGCATTCAGAATTTAGAGACGCCTTGCGCCTGCAGTGGGAGTCTGAAGTTTGCTCACAGAAAGTGCGTCCAGTATTGGTGCGATGAGAAAGGAGACATAACTTGTGAGATATGTCATAAGCCTTATCAACCTGGTTATACTGCCCCACCTCCTCGCCCTCATCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCGGGCACTCCTTTGGACTTGCATGATCCTCGACTCTTGGCAATTGCAGAGGCTGAACAACAATTCTTGGAAGCTGAATATGATGACTATGCTGCTTCTAATGCCAGTGGAGCTGCTTTTTGCCGCTCAGCTGCTTTAATTTTGATGGCCCTTTTACTCTTGCGGCATGCACTCTCTGTCACAGATGCTGACGCCAGTGATGATCCATCAACTTTTTTCTCTATTTTCTTACTTAGAGCAGCTGGGTTTCTTTTACCTTGCTATATTATGGCCTGGGCAATCAGCATTTTGCAACGTCGGCGGCAAAGACAAGAAGCTGCAGCCCTGGCAGCAACCCAAGTTGCTTTTGTTCTACAATCTGGGCAGCATAGGGGCCTGCAATTCGCAATAGCACCGGGACCAACAGTGAATGCACATCAGGAACATGTTTAG | 879 | 0.5154 | MSDHLVLLVDRLVRPVTVESLTQPAQLPSDPSLGDGSVDAAGPSGAAPPADDGAGSELDGGCNEDEPLIQAAECRICQEEDSIQNLETPCACSGSLKFAHRKCVQYWCDEKGDITCEICHKPYQPGYTAPPPRPHPEETTIDIGGGWTISGTPLDLHDPRLLAIAEAEQQFLEAEYDDYAASNASGAAFCRSAALILMALLLLRHALSVTDADASDDPSTFFSIFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPGPTVNAHQEHV | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi05g0688 | 292 | SUPERFAMILY | RING/U-box | 72 | 124 | - | - | |
| Glsi05g0688 | 292 | FunFam | RING/FYVE/PHD zinc finger protein | 62 | 130 | - | - | |
| Glsi05g0688 | 292 | MobiDBLite | consensus disorder prediction | 22 | 62 | - | - | |
| Glsi05g0688 | 292 | Coils | Coil | 162 | 182 | - | - | |
| Glsi05g0688 | 292 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 253 | IPR033275 | - | |
| Glsi05g0688 | 292 | CDD | RING_CH-C4HC3_MARCH | 74 | 120 | - | - | |
| Glsi05g0688 | 292 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 66 | 126 | IPR011016 | GO:0008270 | |
| Glsi05g0688 | 292 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 125 | IPR013083 | - | |
| Glsi05g0688 | 292 | Pfam | RING-variant domain | 74 | 119 | IPR011016 | GO:0008270 | |
| Glsi05g0688 | 292 | Pfam | Protein of unknown function (DUF3675) | 125 | 243 | IPR022143 | - | |
| Glsi05g0688 | 292 | SMART | ringv_2 | 73 | 120 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi05g0688 | Glsi-ChrGlsi05 | 57329799 | 57333097 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi05g0688 | 73 | 149 | C3H Transcription Factor Family | AT2G37950 | 34.831 | 1.27e-06 | 46.6 |