Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0668 ATGGATGAGAGACGTTCTTACTTCCCTAACTGGAAAAGCTCCTTTTCTTCTTCCCCTTCACTATCTGTCAAACTTTGCTTCTCGTGTTGTGCTCTCTCCAGCAGCATCTATAAATATTCCATTTCCTCCTTGGATTATGACTGTCTAACAGTTCCCATATCATCATCATTATCATCATCATCTGCGCAGCATTTTGTCAGAAAGGAAATGAAGGCATGGCCTGCAAATAGTGTTATATACTCTTCGCCAGAAAACCCAAATGGCCTCACTTCTTACCCTTCTTCTCCTTCAATGAGAATGATCTATGCAGACATGGGCTCTCTCTCTCTTACCTCCAACTATGCTTTGGTTTCATCTGTTTCTTCATCTCCAGAGCGTTATGGCGCCTTTAAGAACTCCGAAATGGAGAATGGAAACAGGAGTTGGACTTTTCCAGTAATGATGAGAGATTGCCTTGCCAGAAACTTGGAGGAACATTCCAATGGTCATGTTGTTGTTGTGGACGGTAAAGTTTCTGATTCTAGTGATGGGGTTGGGGAAAGCAGTGAGAAAATGAACCCTGATGGCAACCTTGATAATGATGAGAACCCTAATGAGAATTCTGTCAGCGGCAAAGAAGCAGATTCTGGGCAGTCCAAACTCTGTGCAAGAGGCCATTGGAGGCCTGCCGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGCCCTCAGAACTGGAACCTTATAGCAGAAAAGTTGGAAGGAAGATCAGGTAAGAGCTGTAGGCTGAGATGGTTCAACCAATTGGACCCAAGGATCAACAGAAGAGCTTTCACTGAAGAAGAGGAAGAAAGGCTAATGCAGGCACATAGAATTTATGGTAACAAATGGGCCATGATTGCTAGGCTTTTCCCAGGAAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTGTTATGGCTAGGAAGTACAGAGAACAATCCAGTGCATACAGGAGGAGAAGGCTAAGCCAATCTGTTTACAGACGAATGGAGGAAAATCCAAGCTTTGCCTGCAGCGATGTTGCAGCCACAGTGACAGAACCACCGCCACCACCCCCCTATTGTCTCAGTCACCCCAATGGAGTAGGACTCTACAATAATGATATGGCGAGTTTCCCCTATTCATCCTTCCATGGCTCTTCTGGTGGTGGGGTAGTTGATTATGGCTTAAATGCTTCACCCCACATGACTGGTGGTACCAATCAGGCCCCTCCTCATACTGTCTTGTATTCTCAACAGACACCATTTGATTTCTTCTCTGGTGCTGGAAGCAATGACACGGTGGTGGGTGGGGTTTTCAGGCAGAGCAGATTCTGGGATCACAGGCCAAGTGATGAACAGCAGCGTCATCACGATCATCATCTTTCTGGATTCTTCTACCCTCCTCATTATCCCCTATACATGCAACAGTCAAACTCAAACAGTCACAATTTCTACAGTCTCTCAAATTCCACTGCATCTTCAAGTGAACCTTCATCATCAGTTCAGAACAGAGATCATCAAGTCTGTGATGAGGATCACCCTCCATTTATTGATTTTCTTGGGGTAGGAGCCACCTGA 1584 0.4514 MDERRSYFPNWKSSFSSSPSLSVKLCFSCCALSSSIYKYSISSLDYDCLTVPISSSLSSSSAQHFVRKEMKAWPANSVIYSSPENPNGLTSYPSSPSMRMIYADMGSLSLTSNYALVSSVSSSPERYGAFKNSEMENGNRSWTFPVMMRDCLARNLEEHSNGHVVVVDGKVSDSSDGVGESSEKMNPDGNLDNDENPNENSVSGKEADSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVVMARKYREQSSAYRRRRLSQSVYRRMEENPSFACSDVAATVTEPPPPPPYCLSHPNGVGLYNNDMASFPYSSFHGSSGGGVVDYGLNASPHMTGGTNQAPPHTVLYSQQTPFDFFSGAGSNDTVVGGVFRQSRFWDHRPSDEQQRHHDHHLSGFFYPPHYPLYMQQSNSNSHNFYSLSNSTASSSEPSSSVQNRDHQVCDEDHPPFIDFLGVGAT 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0668 527 MobiDBLite consensus disorder prediction 191 208 - -
Glsi05g0668 527 FunFam MYB transcription factor 217 268 - -
Glsi05g0668 527 SUPERFAMILY Homeodomain-like 217 310 IPR009057 -
Glsi05g0668 527 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 263 IPR017930 -
Glsi05g0668 527 MobiDBLite consensus disorder prediction 486 506 - -
Glsi05g0668 527 CDD SANT 271 314 IPR001005 -
Glsi05g0668 527 SMART sant 268 316 IPR001005 -
Glsi05g0668 527 SMART sant 216 265 IPR001005 -
Glsi05g0668 527 Gene3D - 217 268 - -
Glsi05g0668 527 CDD SANT 220 261 IPR001005 -
Glsi05g0668 527 FunFam MYB transcription factor 270 341 - -
Glsi05g0668 527 PANTHER MYB PROTEIN-RELATED 199 488 - -
Glsi05g0668 527 ProSiteProfiles Myb-like domain profile. 217 263 IPR001005 -
Glsi05g0668 527 ProSiteProfiles Myb-like domain profile. 264 314 IPR001005 -
Glsi05g0668 527 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 318 IPR017930 -
Glsi05g0668 527 MobiDBLite consensus disorder prediction 164 213 - -
Glsi05g0668 527 Pfam Myb-like DNA-binding domain 269 312 IPR001005 -
Glsi05g0668 527 Pfam Myb-like DNA-binding domain 217 263 IPR001005 -
Glsi05g0668 527 Gene3D - 270 340 - -
Glsi05g0668 527 MobiDBLite consensus disorder prediction 486 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0668 Glsi-ChrGlsi05 57167912 57169931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0668 94 342 MYB Transcription Factor Family AT1G69560 54.762 1.35e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi05g0668 Myb_DNA-binding 2.5e-14 CL0123