Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0666 ATGGTTATTGCATGGTACGATGTAAGCGTTTTGTGTATGGTTCGTAAGGGTCCAAAGGGCACAAGTAGTGAAATGGGTTTTGATTGGATGGGCAGGGTAAAGCTAAAGATAAAGAGGCTGGAGAACACCAATGGCCGTCAGGCGACATATGCTAAAAGAAAGAATGGGATCATGAAAAAGGCTACTGAGTTATCTATACTGTGCGATATAGATATTATACTTCTCATGTTCTCACCAACTGGCAAGCCTTCATTGTGCAGAGGAAGGCGCAGTAACATAGAAGAGGTTATTGCAAAGTTTGCTCAACTTACTCCTCAGGAAAGGGCAAAAAGGAAGTTGGAGAGCCTTGAAGCACTGAAGAAAACATTTAGGAAGTTAGACCATGATGTAAATATACAGGAATTTCTGGGAACAAGAAATGTTTCAATAAACCTGTTTTACGGCTCTAACCCATTCTTAAAAATTTTATATGATATTGTATTCTGTAGCACTTGGAATGAGCTTGATAAAATAAATAGTGTGGAACAATTGGGACATATGGAAACTTCACTTAGGGAGTCACTTGATCACCTTCGAACACGTAAGGAAGATATACAAAAGCAGCAACTCGTGAAAATGCAATGCACTAACCAGTTCAATGAGATGCAGATGCCCTTCAGATTCAGTGCTGAGCAACATCTCCAATCTCTATCATGGATTCCCAACGGTGACAACCAACATATGGTTTTACCTGAGGACTCAAACTTGCTTCTCCACAAGGACCTAGAGTGCTCTGCAAGCACCTCTTTTGGGAGTTATGCTAGTTACCTTGGCTCAAGTTCAAGAACAGATATTTCTAATTCTGGGCAAGAAAATGGTGTCCTCAGTGAATTGAGCAGTACAGCCCCTCTGAGTCTACAATTGGGCGGGCAGTTTCCATACCTGCCATACCATTTCAATTTACTGAATGACCCGAAGTTTCAACCAGCTGCCGCAGAGATGAACCCACATGAAAACCCCATAGATTATCACGTTAATGGAAGCTTTGAAGCCCCTAGACCTGGGTATGACAATAACCACCATGGATGGCCTTCCACATCAGAATCTTGTGCTGTTACTATGTTTGATGAGCATTTGTATGCCCAGGCAAGTTCCCCTCAAGTGCACTTTGGCTTCTCATAG 1161 0.4212 MVIAWYDVSVLCMVRKGPKGTSSEMGFDWMGRVKLKIKRLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPTGKPSLCRGRRSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFRKLDHDVNIQEFLGTRNVSINLFYGSNPFLKILYDIVFCSTWNELDKINSVEQLGHMETSLRESLDHLRTRKEDIQKQQLVKMQCTNQFNEMQMPFRFSAEQHLQSLSWIPNGDNQHMVLPEDSNLLLHKDLECSASTSFGSYASYLGSSSRTDISNSGQENGVLSELSSTAPLSLQLGGQFPYLPYHFNLLNDPKFQPAAAEMNPHENPIDYHVNGSFEAPRPGYDNNHHGWPSTSESCAVTMFDEHLYAQASSPQVHFGFS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0666 386 FunFam Agamous-like MADS-box protein AGL30 43 125 - -
Glsi05g0666 386 Gene3D - 43 125 IPR036879 GO:0003677|GO:0046983
Glsi05g0666 386 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 83 IPR002100 GO:0003677|GO:0046983
Glsi05g0666 386 Coils Coil 106 126 - -
Glsi05g0666 386 SUPERFAMILY SRF-like 31 122 IPR036879 GO:0003677|GO:0046983
Glsi05g0666 386 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Glsi05g0666 386 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Glsi05g0666 386 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Glsi05g0666 386 PANTHER SERUM RESPONSE FACTOR HOMOLOG 30 225 - -
Glsi05g0666 386 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Glsi05g0666 386 CDD MADS 31 83 - -
Glsi05g0666 386 ProSiteProfiles MADS-box domain profile. 30 82 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0666 Glsi-ChrGlsi05 57145534 57150087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0666 30 379 Type I MADS-box Gene Family AT2G03060 45.780 1.52e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi05g0666 SRF-TF 2.2e-18 No_clan