Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0659 ATGGAGGGCAGAACACGCTCTGACCTGCCCCCTGGCTTTAGGTTTCACCCAACTGACGAGGAATTAATTGTGCATTACCTTTGTAATCAAGCCACATCAAAGCCATGCCCTGCATCTATCATCCCAGAAGTGGATATTTACAAATTTGATCCATGGGAATTGCCTGAGAAAGCAGAGTTTGGAGAAAATGAATGGTATTTCTTTACACCACGAGAGAGGAAATACCCAAACGGGGTGAGGCCTAACAGAGCTACAGTGTCTGGGTACTGGAAGGCTACTGGCACAGACAAGGCGATCTATAGTGGGGCCAAGCATATTGGGGTGAAGAAAGCTTTGGTCTTTTACAAGGGAAGGCCACCGAAGGGTGTCAAGTCAGATTGGATTATGCATGAGTATCGACTGATAGGATCAAAAAGACAAGCCAACAAGCATATTGGGACCATGAGATTGGATGACTGGGTCTTGTGTAGGATCTACAAGAAGAAGCACATAGAAAAAGTATTGGAACAACAGGAGGAATACCCAACTTCCCAAATTAATATAACGGCAGAAGCAAATGGTCGTAACAGTGAACAACAAACGATGAAACTTCCAAGGACTTGTTCCCTTACCCATCTATTGGACATGGATTTTCTGGCTCCAATTTCACAGCTCTTATCTGATGGTTCCTATAACTCAACCTTTGATTTTCAAATCAACACTGCTTATCCTGGAATAGACCCATTTGTAAAACCTCAGCAGCTGTTTGAAATGCCCTATCATTATCCTGCAGATTCAGAAAAATTCCAACCGAAACAGAGTGGCACCATCACCCAGCCACTATTTATGAACCAAGTGTATGATCAAAGAGGATATGACCAATAA 864 0.4317 MEGRTRSDLPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPEKAEFGENEWYFFTPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGAKHIGVKKALVFYKGRPPKGVKSDWIMHEYRLIGSKRQANKHIGTMRLDDWVLCRIYKKKHIEKVLEQQEEYPTSQINITAEANGRNSEQQTMKLPRTCSLTHLLDMDFLAPISQLLSDGSYNSTFDFQINTAYPGIDPFVKPQQLFEMPYHYPADSEKFQPKQSGTITQPLFMNQVYDQRGYDQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0659 287 FunFam NAC transcription factor 18 165 - -
Glsi05g0659 287 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Glsi05g0659 287 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 195 - -
Glsi05g0659 287 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Glsi05g0659 287 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Glsi05g0659 287 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0659 Glsi-ChrGlsi05 57088221 57089284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0659 1 218 NAC Transcription Factor Family AT1G69490 67.105 1.61e-114 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi05g0659 NAM 2.9e-39 No_clan