Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0656 ATGGTAGCAGTGGAAGCAAAGATGATGGAAGAGACAAAGCCACCACAGATAGGAAGGGCCGAAGCTGAAGAGTATATGCAACAGCTCAGATCTAAAGCGACAGAGCTACTCTTAAGAGAAGAATGGAAAGACGCCATTGAAGCCTGTTCCCACTTCATCACTCTCTGCAAAGGCCAAATCTTTCATACCCATACACAGTCGGATCCTGATCACCTCCAAAAGCTTCGAAAATCCCTCTGCTTAGTCCTTTCTAACAGAGCCGAAGCAAGGTCCAGATTGCGAGAGTTCTACAGCGCATTGGAAGATTGTGACCAAGCGTTGGAAATTGATAATACCCATTTCAAGACTCTGATCTGCAAAGGTAAAATCTTGCTCAATCTCAACAGGTATTCCATGGCTCTGGGGTGCTTCAGAGCTGCTCTTCTTGATGCTCAGGCTAATGGGAACTCTGAAAGCATTAATGGGTACGTGGAGAAATGCAAGAGATTGGAGTTTCTTTCAAGGACTGGAGCTCTGGATCTTTCAGATTGGGTTGCAAATGGCTTTCGCGGGAAGTCGCCAGAACTCGCAGAGTACACCGGCGCAGTGCAGATCAGAAAATCTGAGATCAGTGGGCGCGGCTTGTTTGCTACTAAGAACATTGATGCAGGGACCTTGGTTTTGGTTACCAAAGCGATAGCCATGGAGAGGAGTATATTAGCTGGCAAAGATTTGAGTGAGGATGCTCAATTAGTGATGTGGAAGAACTTCATTGATAAAGTTTCAGACTTTGCCAGAAAATGTCCCAAAACCAGCAATTTGATTAGCAAATTGTCGAGTGGGGAAGATGAGGATGCACTTGAAGTTCCTGAAATAAGTCTCTTTAAGCCAGAGCCACAGAAGAACGTGAAATCAAGTGAGAAGCTTGATATGGGCAAATTGCTTGCTATATTAGATGTGAATTCCCTAACTGAGGATGCAGTTTCAGCCAATGTACTGGGGAAGAACAGCGATTATTATGGTGTTGGGTTATGGTTGTTAGCTTCATTCATCAACCATTCATGCTGTCCCAACGCAAGGAGATTGCATGTGGGGGACTATTTGATAGTTCATGCTTCTAAAGATATCAAGGCAGGCGAAGAGATTACGTTTGCCTATTTTGACCCTCTTTCTTCATTGCACAAGCGCAAGGAAATGTCAATGTCATGGGGAATTCAGTGTAAATGCAAGAGATGCAAGTTTGAGGCAGAGATCTTCTCTAAACAAGAGGTAAAAGAGATTGAGATTGGTCTTGAAAGAGGGATGGATGTGGGTGGTGCAGTGTATAAATTAGAAGAAGAAATGAAGAGATGGAAGGTGAGGGGGAAGGAGAAGGCCTATCTGAGGGCATCCTTTTGGTCTGCATATTCTGATGTCTATCGGTCGGATAGGTCAATGAAAAGGTGGGGAAGGCGAATTCCAGCAATGGATGCAGTCGTTGATGGCATCATAGATGTAACTGGAGGTGATGAGAGGTTACTTAAGATCAAGATGGAGGAGTTGAAGAAAAATGGAGGTGGAGTTATGGAGGTGGAGAAATCTTTGAAGCTGGCAAGAGAGGTTTATGGGAAGGTGGTGAAAAAGCAGGCAATGAGGGCCCTTCTTGAGCTTTGCGTTGGAGCTCATGAGTCATGA 1653 0.4465 MVAVEAKMMEETKPPQIGRAEAEEYMQQLRSKATELLLREEWKDAIEACSHFITLCKGQIFHTHTQSDPDHLQKLRKSLCLVLSNRAEARSRLREFYSALEDCDQALEIDNTHFKTLICKGKILLNLNRYSMALGCFRAALLDAQANGNSESINGYVEKCKRLEFLSRTGALDLSDWVANGFRGKSPELAEYTGAVQIRKSEISGRGLFATKNIDAGTLVLVTKAIAMERSILAGKDLSEDAQLVMWKNFIDKVSDFARKCPKTSNLISKLSSGEDEDALEVPEISLFKPEPQKNVKSSEKLDMGKLLAILDVNSLTEDAVSANVLGKNSDYYGVGLWLLASFINHSCCPNARRLHVGDYLIVHASKDIKAGEEITFAYFDPLSSLHKRKEMSMSWGIQCKCKRCKFEAEIFSKQEVKEIEIGLERGMDVGGAVYKLEEEMKRWKVRGKEKAYLRASFWSAYSDVYRSDRSMKRWGRRIPAMDAVVDGIIDVTGGDERLLKIKMEELKKNGGGVMEVEKSLKLAREVYGKVVKKQAMRALLELCVGAHES 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0656 550 Gene3D Tetratricopeptide repeat domain 16 165 IPR011990 GO:0005515
Glsi05g0656 550 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 12 543 - -
Glsi05g0656 550 CDD SET_SMYD 308 405 - -
Glsi05g0656 550 SMART set_7 194 386 IPR001214 GO:0005515
Glsi05g0656 550 SUPERFAMILY TPR-like 24 142 IPR011990 GO:0005515
Glsi05g0656 550 Coils Coil 19 39 - -
Glsi05g0656 550 ProSiteProfiles SET domain profile. 194 380 IPR001214 GO:0005515
Glsi05g0656 550 SUPERFAMILY SET domain 195 406 IPR046341 -
Glsi05g0656 550 Gene3D SET domain 289 410 IPR046341 -
Glsi05g0656 550 SMART tpr_5 80 113 IPR019734 GO:0005515
Glsi05g0656 550 SMART tpr_5 114 147 IPR019734 GO:0005515
Glsi05g0656 550 SMART tpr_5 26 59 IPR019734 GO:0005515
Glsi05g0656 550 Pfam SET domain 205 379 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0656 Glsi-ChrGlsi05 57067435 57069087 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi05g0656 SET 8.6e-18 No_clan