Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0654 ATGGGTAGGTCACCATGTTGTGAGAAAGTGGGATTGAAGAAAGGACCATGGACTCCGGAGGAGGACCAGAAGCTCATAGCTTATATTGAACAACATGGCCATGGAAGCTGGCGTGCATTGCCCACCAAAGCTGGTCTTCAAAGATGTGGGAAGAGTTGCAGATTGAGGTGGACTAATTATCTGAGACCTGATATAAAACGAGGGAAGTTCAGCTTGCAGGAAGAGAGAACTATCATTCAACTTCATGCTCTTCTTGGAAATAGGTGGTCAGCCATAGCAGCTCACTTGGCGAAGAGAACAGACAATGAGATCAAGAACTACTGGAACACACACCTGAAGAAAAGGCTAACCAGAATGGGAATAGATCCCACTACCCACAAGCCTAAAACTGATGCTCTCGGCTCGCCTAGCAGCCAGTCCAAGGACGTCGCCAATCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGGCTCGAAGCAGAAGCCAGATTAGTCAAAGAATCCAAGTTCCAGCTCGGATCCTCCTCCGCCCCTCAGCCCTCTCGGCTCATCCTCAACAAAATCCCAGCTCAACCATCACTCCCGCCATGCCTAGACGTGCTCAAAGTATGGCGCCAAAGTTCATGGTCATCGTCATCGCCCGCGCCACCTCCGTCCAACCACAACAACAAAATGCATAACATGTACGCCTTGATGCTCGCGGCTGCCGCCACCGACCTCGAGTCCCCGACGTCCACCTTGAGCTTCCCCGAAACCACAGCTGGGTTAACCAATCAAAACTTACTTCCTCCTCCGACCGCCGCTGCCGAGGATTCAGCTACTTGTGGCGGTGGCGGTGTGGTCAACGAGTCATGGGGGTATTTAACAAAACAAAACAACCCGGAAATACTGGACGACAAATTTTTAATGTCGAGCATGGAAGAAGATCACGACGACATTATGGTGGCAGTGGAAGCTTTTATAGCAGAAAGATATAACAAGAGTGTCCCAGCTTTCTCGAACAGTACTGTAATGGAAGAAGGTGGTCTGAACGATGATGTTCTGGTTTATGATTCCAATGAGAATAACATAGGAGAAGATCAAAACCTGGGAATCCTCGGTGTGGATGATGGAAGTAACGTGTACTTTGAGGAGAAGAACCATTACTGGAATGGCATAGCTGAACTTGGTGAAAACTGA 1176 0.4923 MGRSPCCEKVGLKKGPWTPEEDQKLIAYIEQHGHGSWRALPTKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEERTIIQLHALLGNRWSAIAAHLAKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGSPSSQSKDVANLSHMAQWESARLEAEARLVKESKFQLGSSSAPQPSRLILNKIPAQPSLPPCLDVLKVWRQSSWSSSSPAPPPSNHNNKMHNMYALMLAAAATDLESPTSTLSFPETTAGLTNQNLLPPPTAAAEDSATCGGGGVVNESWGYLTKQNNPEILDDKFLMSSMEEDHDDIMVAVEAFIAERYNKSVPAFSNSTVMEEGGLNDDVLVYDSNENNIGEDQNLGILGVDDGSNVYFEEKNHYWNGIAELGEN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0654 391 Gene3D - 13 66 - -
Glsi05g0654 391 CDD SANT 69 112 IPR001005 -
Glsi05g0654 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi05g0654 391 SMART sant 13 63 IPR001005 -
Glsi05g0654 391 SMART sant 66 114 IPR001005 -
Glsi05g0654 391 CDD SANT 16 61 IPR001005 -
Glsi05g0654 391 Gene3D - 69 116 - -
Glsi05g0654 391 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi05g0654 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi05g0654 391 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi05g0654 391 FunFam MYB transcription factor 68 129 - -
Glsi05g0654 391 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Glsi05g0654 391 MobiDBLite consensus disorder prediction 118 143 - -
Glsi05g0654 391 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi05g0654 391 FunFam MYB-related transcription factor 13 66 - -
Glsi05g0654 391 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi05g0654 391 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0654 Glsi-ChrGlsi05 57041747 57043807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0654 1 178 MYB Transcription Factor Family AT3G01140 77.660 1.87e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi05g0654 Myb_DNA-binding 3.1e-15 CL0123