Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0651 ATGAAGGATAACTGCCACTTCTGTACTGTAGAAGGGGGAGTACTGAAAAGTAACTTGGCCAGTTGGCCTAAATATTCAGGGGACCTGGATTGTATTGGAGGGGTTTGGTATACTTTAGTAGCTGATTTGAAACTTGATCTTGACATTCCAAACTCGGACACCGTTGCTTTGTTAGACTGGTTGGTATCAAAGATGGCTTTTTGGGTCGGCAGAGGTGGGAGTGCGGATGGGGGACATCGGGATTGGGATCGTTCTCTAGACACAAGCAGAACCCATAGTATGGCTTCTGGCTTTTCTCCGTTTCCAGGCTCTGCATTTCTTTCCCCACCTATATCCCATAGCAGATGCTTCTCCTTCCCAGCCAAAGGGCCATTGCTTCACCTCAAAAGGCCTCTATCGGCTAAGTCTCTAGCTTCTTTGGAAACAGACACGTCATTGCCTCCGGCGATTCAGACCTTCTGGCAGTGGCTATGGGACGAAGGAGTTATCTCCGGAAAGACTCCGGTGAAGCCCGGCATCGTGCCTGAAGGCCTGGGATTGATTGCCCAGAGAGACATATCTCGAAACGAAGTCGTTTTGCAGGTACCGAAGAGGCTCTGGATAAACCCTGATGCAGTGGCAGCATCGGAAATTGGAAACGTGTGTAGTGGGTTGAAGCCTTGGGTGTCTGTTGCTCTGTTTTTGATTCGAGAGAGGTTGAGGGATGAATCTCTGTGGAAGCATTACTTCAGCATTCTTCCAAAAGTCACCGATTCGACTATATATTGGTCAGAGGAGGAGCTCTCTGAGCTTCAAGGTACTCAACTTCTGAATACAACACTGGGTGTGAAAGAATATGTGCAGAATGAATTTCTGAAACTGGAAGAAGAAATCATACTTCCAAATAAGCAGCTTTTCCCTTTTCCTATAACACTGGATGACTTCTTTTGGGCATTTGGAATTCTCAGATCAAGGGCATTCTCTCGCCTTCGCAACGAAAATCTAGTTGTGATTCCCTTGGCAGACTTGATAAACCATAGTTCCAGTGTCACCACAGAAGATCATGCATATGAAATTAAAGGAGCAGCAGGCCTTTTCTCTTGGGATTACCTATTTTCTCTAAGGAGTCCCCTTTCTGTCAAGGCTGGGGGCCAGATATTTATCCAATATGATTTGAAGAAAAGCAATGCTGAATTGGCTCTAGATTACGGCTTCATTGAACCAAAAGCAGATAGAAATGCATATACCCTGACATTACAAATATCTGAATCAGACCCCTTTTTTGGTGACAAACTAGACATAGCTGAGGCCAATGGCTATGGTGAAACTGCATATTTTGACATCTTCTACGACTGTCCAATTCCACCAGGATTACTTCCATATCTGCGGCTGGTAGCTCTTGGAGGTACCGATGCTTTCCTATTGGAATCTATATTTAGAAACTCCGTTTGGGGTCACCTTGAGTTGCCTGTGAGCCGTGACAATGAGGAGCTAATATGCCGAGTCATTCAAGATGCCTGCAAATCTACCCTTGCTGGTTATCATACAACCATTGAAGAGGATGAAAAGTTAAAAGAAGCAAATCTTACTTCAAGGCTTGCCATTGCAGTGGGAGTAAGAGAATGGGAGAAGAAGGTGCTGCAGCAAATTGAGGGGATCTTCAAGGAGAAAGAATTGGAGTTGGATCGGTTAGAATATTATCAAGAAAGGAGGCTCAAGGACCTTGGTCTCTGTGGAGAAAATGGCGAGATCCTTGGGGACCTCAGCAAATTCATGTAA 1758 0.4516 MKDNCHFCTVEGGVLKSNLASWPKYSGDLDCIGGVWYTLVADLKLDLDIPNSDTVALLDWLVSKMAFWVGRGGSADGGHRDWDRSLDTSRTHSMASGFSPFPGSAFLSPPISHSRCFSFPAKGPLLHLKRPLSAKSLASLETDTSLPPAIQTFWQWLWDEGVISGKTPVKPGIVPEGLGLIAQRDISRNEVVLQVPKRLWINPDAVAASEIGNVCSGLKPWVSVALFLIRERLRDESLWKHYFSILPKVTDSTIYWSEEELSELQGTQLLNTTLGVKEYVQNEFLKLEEEIILPNKQLFPFPITLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSSSVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSVKAGGQIFIQYDLKKSNAELALDYGFIEPKADRNAYTLTLQISESDPFFGDKLDIAEANGYGETAYFDIFYDCPIPPGLLPYLRLVALGGTDAFLLESIFRNSVWGHLELPVSRDNEELICRVIQDACKSTLAGYHTTIEEDEKLKEANLTSRLAIAVGVREWEKKVLQQIEGIFKEKELELDRLEYYQERRLKDLGLCGENGEILGDLSKFM 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0651 585 Gene3D set domain protein methyltransferase, domain 1 147 399 - -
Glsi05g0651 585 CDD SET_RBCMT 161 399 IPR044431 GO:0016279|GO:0018022
Glsi05g0651 585 SMART set_7 165 390 IPR001214 GO:0005515
Glsi05g0651 585 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 407 578 IPR036464 -
Glsi05g0651 585 Pfam SET domain 177 383 IPR001214 GO:0005515
Glsi05g0651 585 ProSiteProfiles SET domain profile. 160 384 IPR001214 GO:0005515
Glsi05g0651 585 Gene3D - 400 564 IPR036464 -
Glsi05g0651 585 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 149 531 - -
Glsi05g0651 585 SUPERFAMILY SET domain 147 402 IPR046341 -
Glsi05g0651 585 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 400 564 - -
Glsi05g0651 585 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 146 398 - -
Glsi05g0651 585 Pfam Rubisco LSMT substrate-binding 416 540 IPR015353 -
Glsi05g0651 585 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 7 583 IPR011192 GO:0009507|GO:0030785
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0651 Glsi-ChrGlsi05 56999164 57009145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0651 150 341 NAC Transcription Factor Family AT3G56570 28.358 6.82e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi05g0651 SET 1.2e-07 No_clan