Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0648 ATGAGCTCCGACAACCCCACCATGACCGACAGCGGAGATTCGTCCGGCAGCTCGACGTCGGCGCTGGACAAGAGCAAGCAGAAGGAGAAGACCAGAGTGAGCCGCACATCGTTGATCCTGTGGCATGCCCATCAAAACGACCCCGCCGCTGTTCGAAAGCTTCTGGAGGAGGACCCGTCGCTGGTGAAGGCAACCGATTATGATAAACGTACCCCGCTTCATGTGGCTTCCCTCCATGGCTGGGTCGATGTCGCTAAGTGCTTGATTGAATTTGGGGCCGATGTCAACGCCCAGGATCGTTGGAAAAACACTCCTCTAGCTGATGCAGAAGGAGCAAAAAGGCTTACCATGATCGAGCTTTTAAAATCAAACGGAGGCTTGTCTTTTGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTACCTCCTCCATTGCCTAACAAGTGTGATTGGGAAATTGACCCTTCTGAACTGGACTTCTCAAATTCAGCTCGTATTGGAAAGGGATCTTTTGGTGAAATTTTAAAAGCTCATTGGCGTGGAACACCAGTTGCTGTCAAACGCATTCTTCCATCTCTCTCAGATGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTTAAGTTGCTAGTGAAGCTTCGACACCCTAATATAGTCCAGTTCCTTGGAGCTGTAACTGACAAGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTATCTCAAGGAAAAAGGATCGCTTAGTCCTTTGACAGCTGTCAACTTTGCCTTGGATATTGCCAGAGGAATGGCTTATCTTCACAATGAACCAAATGTTATAATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCAGACCATTTAAAAGTTGGGGATTTTGGACTGAGTAAGCTTATCAAGGTCCAGAGTTCTCATGATGTTTACAAGATGACTGGTGAAACTGGAAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACACCGGAGGTATGATAAGAACGTTGATGTGTTCTCCTTTGCAATGATTCTGTATGAGATGCTTGAAGGGGAACCACCTTTTGCAAGTTATGAACCTTATGATGGGGCCAAATATGTGGCAGAAGGACACAGGCCCACTATTCGTGCAAAGGGTTATATCCCTGAACTGCGAGAGTTAACCGAGCAGTGTTGGGATGCTAATATGAATCAAAGACCTTCCTTCTTGGACATCCTCAAACGGCTTGAAAAGATCAAGGAAAATTTACCTACAGATCATCACTGGCACTTGTTCACTTCATAG 1311 0.4577 MSSDNPTMTDSGDSSGSSTSALDKSKQKEKTRVSRTSLILWHAHQNDPAAVRKLLEEDPSLVKATDYDKRTPLHVASLHGWVDVAKCLIEFGADVNAQDRWKNTPLADAEGAKRLTMIELLKSNGGLSFGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSARIGKGSFGEILKAHWRGTPVAVKRILPSLSDDRLVIQDFRHEVKLLVKLRHPNIVQFLGAVTDKKPLMLITEYLRGGDLHQYLKEKGSLSPLTAVNFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLIKVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKNVDVFSFAMILYEMLEGEPPFASYEPYDGAKYVAEGHRPTIRAKGYIPELRELTEQCWDANMNQRPSFLDILKRLEKIKENLPTDHHWHLFTS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0648 436 Gene3D Phosphorylase Kinase; domain 1 145 239 - -
Glsi05g0648 436 Pfam Protein tyrosine and serine/threonine kinase 163 418 IPR001245 GO:0004672|GO:0006468
Glsi05g0648 436 FunFam serine/threonine-protein kinase STY46-like 153 239 - -
Glsi05g0648 436 ProSiteProfiles Protein kinase domain profile. 160 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0648 436 PIRSF ILK 1 436 - -
Glsi05g0648 436 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
Glsi05g0648 436 PRINTS Tyrosine kinase catalytic domain signature 235 248 IPR001245 GO:0004672|GO:0006468
Glsi05g0648 436 PRINTS Tyrosine kinase catalytic domain signature 389 411 IPR001245 GO:0004672|GO:0006468
Glsi05g0648 436 PRINTS Tyrosine kinase catalytic domain signature 273 291 IPR001245 GO:0004672|GO:0006468
Glsi05g0648 436 Gene3D Transferase(Phosphotransferase) domain 1 240 432 - -
Glsi05g0648 436 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Glsi05g0648 436 FunFam Integrin-linked protein kinase family 239 434 - -
Glsi05g0648 436 SUPERFAMILY Ankyrin repeat 36 125 IPR036770 -
Glsi05g0648 436 ProSitePatterns Protein kinases ATP-binding region signature. 166 187 IPR017441 GO:0005524
Glsi05g0648 436 CDD STKc_MAP3K-like 166 418 - -
Glsi05g0648 436 SUPERFAMILY Protein kinase-like (PK-like) 158 432 IPR011009 -
Glsi05g0648 436 MobiDBLite consensus disorder prediction 1 22 - -
Glsi05g0648 436 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 64 423 - -
Glsi05g0648 436 MobiDBLite consensus disorder prediction 1 32 - -
Glsi05g0648 436 Gene3D - 7 133 IPR036770 -
Glsi05g0648 436 SMART serkin_6 160 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0648 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Glsi05g0648 436 SMART ANK_2a 68 97 IPR002110 GO:0005515
Glsi05g0648 436 Pfam Ankyrin repeats (3 copies) 35 99 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0648 Glsi-ChrGlsi05 56979411 56986133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0648 1 436 MAP Kinase Kinase Kinase AT1G14000 84.703 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Glsi05g0648 PK_Tyr_Ser-Thr 1.1e-63 CL0016