Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0645 ATGGAAGAGGCTGACGAGTCCAATGCTAACAAGAAGTTCATAGCCAAAAGAAGGAGCTTCAATGGCGGACCCAACTCTCATGAGCATCACTATCAGCATCATCAGCTACTACAATACTCGAATCAGTTTGGATTCTGCAACCAGAACAAGTATCAGAGGTACTACCCGGCTCTTCTCCCTCTGCCTTCTCTTGTTCCTCTGCAACTAGCTTTGACGCCACCGTTCCCTCGAAACCAGAGCTTCAAATCAGAAACCCATGTGCAGAAATCTCCATGCAAGCTCTATAATTCTCCCTTTGCTGCCTCCTCCGATAACAAGGTCTCAGAATACCCAGTTGCTTATGCTCCAAAGGGGCGACAACATCAAGCCAAGGCATCCTTTAAGGGAGATGATGGGAAGAAACTCATACTTGCAAAGAAAGCACAGGCACTAGTTGCTGCAAGAAGGCCAGACTCTGGTGGCAAAGAGGGTTCTGTGATCTCTCTCCTTGCCAACCATTTTCTAGTGCAATTTGATTCATCACAAAAAATATACCATTACAATGTTGAAATTACTCCTAATCCCTCCAAGAAAGTTGCCCGGGCAATCAAACAGAAATTAGTTGAAAGCAATTCTACTGTGCTCTCTGGTGCTATGCCGGCATATGATGGGCAAAAGAATCTTTACAGCGCAGTTGAATTCCAAAATGATAAGCTTGAGTTCTACATTAGCCTCCCAATCCCAACAAGAAAGTTGCCATTGCATTATGGAGAAATGGGTGACTCGAAAGAGAAGCATGAACAGCTTAAACTGTTCCGAATAAATATCAAACTAGTCTCTAAGATTAATGGAAAGGAGTTGACGAACTACTTGAACACAGAGGGAGATGATTGGATTCCACTTCCGCAGGATTATCTTCATGCTTTGGATGTGGTTCTGAGGGAGAGTCCAACTGAGAAGTGTATACCTGCAGGGAGGTCTTTCTATTCAACTTCAATGGGAAGAAGCAAAGAGATTGGGGGAGGAGCAATTGGAGTGAGAGGGTTCTTTCAGAGTCTAAGACCAACCCAACAAGGACTTGCCCTCAACGTTGATTTCTCTGTAACTGCTTTTCATGAGAGCATAGGAGTGATTCCATACTTGCAGAAGCGTCTTGAGTTTCTTCAAGATCTTTCTCAAAGGAAGGCAACAAGTTTAACTGGTGAAGAGAGGAAGGAAGTGGAGAAGTCATTGAAGAACATCAGGATCTTTGTTTGCCATAGAGAAACTGTACAGAGATACCGTGTCTATGGCTTAACTGAGGAGGCTACTGAAAATCTTTGGTTTGCTGATAGGGATGGAAAGAATCTGAGGCTTGTGAGCTACTTTAAAGAACACTATAACTATGAAATACAATTTAGAAAATTGCCATGCTTGCAAATCAGTAGGAGCAAACCATGTTATCTCCCCATGGAGCTTTGTGTGATCTGTGAAGGCCAGAGATTCCTTGGGAAGCTGTCTGATGATCAGACAGCAAGAATACTCAATATGGGCTGCCAAAGACCAAGAGAACGAAAAGCCATCATCGAACGAGTCATGAGAGGGCCTGTTGGTCCAACCAGTGGCAACCAGGAAAGAGAATTCAAAGTCCAAGTTTCAAGAGAAATGACTTGTTTGACAGGGAGAATTCTTCACCCTCCTAAGCTAAAGCTTGGGGATAGAGGTCATGTAACAAACCTAATTCCTTCACGCCATGACCGGCAGTGGAACCTTCTGGATGGTCATGTCTTTGAAGGAACTAAAATTGAAAGGTGGGCGCTAATAGGTTTTGGTGGTACACCTGACCAGAAGTCCAATATCCCTAGATTTATAAACCAGCTATGTCAACGGTGTGAAGAATTGGGCATTTTACTTAACAAGAACACAATTACTAGCCCCCATTTTGAATCAGCCCAGGTGCTTAATAATGTCACCCTTCTGGAATCTAAGCTCAAGAAAATCCAGAGAACTGCCTCAAACAATCTCCAGCTGCTTATTTGTATTATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGAATAGCAGAGACGAGTATTGGAGTTATGAGCCAATGCTGCTTGTACCCAAATCTCAGCAAATTAAGTTCCCAATTTTTGGCTAATTTGGCCCTCAAAATCAATGTCAAAGTTGGCGGATGCACAGTTGCCCTGTACAATTCACTGCCCTCTCAAATACCACGACTTTTTCAGTATGATGAGCCAGTGATATTTATGGGTGCTGATGTAACACATCCTCATCCGCTTGATGATCTCAGTCCATCTGTTGCTGCTGTCGTTGGTAGCATGAATTGGCCAACAGCAAACAAATATATTTCAAGAATAAGGTCTCAAACACATCGACAAGAAATCATCCAGGATCTTGGTGCAATGGTGAAGGAGCTACTAGATGATTTTTCTCAGGAAGTAAAGAAACTCCCTAGGAGAATAATTTTCTTCAGAGATGGGGTTAGTGAAACTCAGTTTTATAAAGTGCTTCAGGAAGAACTGCAATCCATCAAAGGCGCATGTTCCAGATTTCCTGGTTATAAACCTTTCATTACTTTTGCAGTAGTACAGAAGAGGCACCACACAAGGCTGTTTCCCTTCGAAACCAATCAGTCTTCCACTCAAAACCATTTTTGTTATGAGAATATACCCCCAGGGACTGTGGTTGACTCTGTGATCACTCATCCAACAGAATTCGATTTCTATCTTTGTAGCCACTGGGGTATGAAAGGAACAAGCAGGCCGACTCATTACTATGTTTTGTGGGATGAAAACCGGTTTACTTCTGATGAACTCCAGAAGCTGGTTTACAACCTATGCTATACTTTTGTTAGGTGCACCAAGCCTATTTCCTTGGTTCCTCCTGCTTATTATGCCCATTTAGCTGCATACAGAGGCAGACTCTACCTTGACCGATCAGAGTCCTCTGCCTTATTCAAAGGTACCTCTACATTATCAAGAGCTGCACCTCCAGAGACAACACCTCTACCAAAACTTAGCGAGAACATCAAAAACCTCATGTTCTACTGCTAG 3039 0.4301 MEEADESNANKKFIAKRRSFNGGPNSHEHHYQHHQLLQYSNQFGFCNQNKYQRYYPALLPLPSLVPLQLALTPPFPRNQSFKSETHVQKSPCKLYNSPFAASSDNKVSEYPVAYAPKGRQHQAKASFKGDDGKKLILAKKAQALVAARRPDSGGKEGSVISLLANHFLVQFDSSQKIYHYNVEITPNPSKKVARAIKQKLVESNSTVLSGAMPAYDGQKNLYSAVEFQNDKLEFYISLPIPTRKLPLHYGEMGDSKEKHEQLKLFRINIKLVSKINGKELTNYLNTEGDDWIPLPQDYLHALDVVLRESPTEKCIPAGRSFYSTSMGRSKEIGGGAIGVRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLQDLSQRKATSLTGEERKEVEKSLKNIRIFVCHRETVQRYRVYGLTEEATENLWFADRDGKNLRLVSYFKEHYNYEIQFRKLPCLQISRSKPCYLPMELCVICEGQRFLGKLSDDQTARILNMGCQRPRERKAIIERVMRGPVGPTSGNQEREFKVQVSREMTCLTGRILHPPKLKLGDRGHVTNLIPSRHDRQWNLLDGHVFEGTKIERWALIGFGGTPDQKSNIPRFINQLCQRCEELGILLNKNTITSPHFESAQVLNNVTLLESKLKKIQRTASNNLQLLICIMERKHKGYADLKRIAETSIGVMSQCCLYPNLSKLSSQFLANLALKINVKVGGCTVALYNSLPSQIPRLFQYDEPVIFMGADVTHPHPLDDLSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVKELLDDFSQEVKKLPRRIIFFRDGVSETQFYKVLQEELQSIKGACSRFPGYKPFITFAVVQKRHHTRLFPFETNQSSTQNHFCYENIPPGTVVDSVITHPTEFDFYLCSHWGMKGTSRPTHYYVLWDENRFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLDRSESSALFKGTSTLSRAAPPETTPLPKLSENIKNLMFYC 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0645 1012 Pfam PAZ domain 378 500 IPR003100 GO:0005515
Glsi05g0645 1012 SMART Piwi_a_2 663 973 IPR003165 GO:0003676
Glsi05g0645 1012 Pfam Argonaute linker 1 domain 317 365 IPR014811 -
Glsi05g0645 1012 SMART DUF1785_2 315 367 IPR014811 -
Glsi05g0645 1012 Gene3D - 735 1012 IPR036397 GO:0003676
Glsi05g0645 1012 SMART PAZ_2_a_3 375 515 IPR003100 GO:0005515
Glsi05g0645 1012 Pfam N-terminal domain of argonaute 160 306 IPR032474 -
Glsi05g0645 1012 Gene3D - 549 725 - -
Glsi05g0645 1012 FunFam protein argonaute 10-like 731 1012 - -
Glsi05g0645 1012 ProSiteProfiles PAZ domain profile. 375 484 IPR003100 GO:0005515
Glsi05g0645 1012 CDD Piwi_ago-like 532 972 IPR045246 -
Glsi05g0645 1012 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 140 974 - -
Glsi05g0645 1012 Pfam Piwi domain 664 969 IPR003165 GO:0003676
Glsi05g0645 1012 Gene3D paz domain 361 489 - -
Glsi05g0645 1012 ProSiteProfiles Piwi domain profile. 663 973 IPR003165 GO:0003676
Glsi05g0645 1012 FunFam Argonaute 10 549 725 - -
Glsi05g0645 1012 FunFam Protein argonaute 7 362 488 - -
Glsi05g0645 1012 SUPERFAMILY PAZ domain 362 520 IPR036085 GO:0005515
Glsi05g0645 1012 CDD PAZ_argonaute_like 378 483 - -
Glsi05g0645 1012 SUPERFAMILY Ribonuclease H-like 648 973 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0645 Glsi-ChrGlsi05 56937044 56940666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0645 154 1012 Eukaryotic Initiation Factors Gene Family AT1G48410 41.472 0.0 640