Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0607 ATGGAGGAGAGAAAATTTGTGTGCAAATTCTGCAACAAGAGGTTCCCTTGTGGGAAGTCTTTGGGTGGTCACATCAGGACCCACATGACAGAACATTCCCCTCAACATTTTGATCGGAAAATTAGCAATGCTGATGGTTCAGTCAAGCTCGATTCTATGAGGAAGAAGAAAAGAGATTTTATGGGTCTCAGAGACAACCCCAGAAAGACATCGAGGTTTGGGCCTTCCAATACTACTTTACATCCAACTAGGATTCATGATCAAGACAAGTTATGCAAAGAATGTGGGAAAGGTTTTCCTTCACTGAAAGCTCTCTGTGGTCACATGGCTTCTCACTCTGAAAAAGAGAAGCAGAAATTGGTAATGGATACTCAATCTGATACTGAGACTTCTTCTGCTCCAACCCATCCAAGGGCTTCGAAAAGAATGAGGTTCATGATCCTTAATAATGGTTCTTCCTCTGTGTCAGAGGTGGAACAAGAACAAGAAGAGGTGGCTAGGTGTTTGATGTTGTTGTCCCAGGATTCTAGCCTTACGGGTCGTTTTGGTCTGGTCACAGAATCTTCTGACAACAAATCGGTTGCTTTAGAGGAAAAATCACCTTCCGTTGATACGAAGATTACCATAAATAATGGTAAGAACTCTGTTTGTGATGCTTCGGAGGTTATGGAGAAGAAGAAGGTGAGAAATTCTGATATTTCAGATTCTGGGTATTTCAGATATGATCCCAAAAAGTTAAAATCTGAGGGCTTTAAAAGGTTTGGGTTTGAGGATTATGATTACGAATCGATGAAGAAAAGAAGCAGAAGCAGGAAGACAGAATCTAAGGTGATGGAAATTTTGGACTATGCTAAAACAGATGAAGCAACAAGAAAGTTTGATACGAGAAACAGAGAAAATTTAGACGGGGTTTTCTGGAAAGACCAAGAAATCTACAAGAGTGGTGGAAAGGGATGGATCGATGGCTGCTCTTATGAAAGTGATGAAGACACGCAAAACAGTACAGACACAGATTCTTATCATGCTCGGAAGCCTCAGAGCAGGAAGACCAAGAAGACGTTGAAGTCAAAGAGAAGCAGCAAGGAGCATGAGTGCCCAATCTGCAATAGGATATTCAGGTCAGGCCAAGCCTTAGGAGGTCACAAAAGGTCCCATTTTGTTGGAGGTTTTGAAGAGAACACAACTCTGTTGATGAATAGGGAAAATGAGGCCATCCTGGGTTTGCATCATTTTAAAGCATCTGATGGTCAACCCATTATGTCCGTGATATGTGCGGAGCCTGGGAACTCTCATAAGAGGGGAGAGGCTGCTTATACTTCTCTCGCCAAAAAGTGCTTCTTGGGATCAACTTATGATGGTGCTGCTGTTGAATTAAGAGCTCAAGAAGCATTACTTGCTTCTGTTATTGGCTCTAATGAGTGGTTCAGCGTCATGCTTAGTTCACGGGCAGGTGTTGTCTCTATTGGACAAAAAAAAGTAAAGGCCAAGCAGGCAACTTTTCTGACTATTCGTTCTTGCCAAGACAAAATGTGCATAGTGATTGCTGAGACTGCTTTGGCCAGCCCCCTCCATACGGAATCACAATTTCTTTTTGACAAAGCAATTTAG 1608 0.4229 MEERKFVCKFCNKRFPCGKSLGGHIRTHMTEHSPQHFDRKISNADGSVKLDSMRKKKRDFMGLRDNPRKTSRFGPSNTTLHPTRIHDQDKLCKECGKGFPSLKALCGHMASHSEKEKQKLVMDTQSDTETSSAPTHPRASKRMRFMILNNGSSSVSEVEQEQEEVARCLMLLSQDSSLTGRFGLVTESSDNKSVALEEKSPSVDTKITINNGKNSVCDASEVMEKKKVRNSDISDSGYFRYDPKKLKSEGFKRFGFEDYDYESMKKRSRSRKTESKVMEILDYAKTDEATRKFDTRNRENLDGVFWKDQEIYKSGGKGWIDGCSYESDEDTQNSTDTDSYHARKPQSRKTKKTLKSKRSSKEHECPICNRIFRSGQALGGHKRSHFVGGFEENTTLLMNRENEAILGLHHFKASDGQPIMSVICAEPGNSHKRGEAAYTSLAKKCFLGSTYDGAAVELRAQEALLASVIGSNEWFSVMLSSRAGVVSIGQKKVKAKQATFLTIRSCQDKMCIVIAETALASPLHTESQFLFDKAI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0607 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Glsi05g0607 535 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Glsi05g0607 535 Pfam C2H2-type zinc finger 92 114 - -
Glsi05g0607 535 Pfam C2H2-type zinc finger 363 385 - -
Glsi05g0607 535 Pfam C2H2-type zinc finger 6 30 - -
Glsi05g0607 535 ProSitePatterns Zinc finger C2H2 type domain signature. 365 385 IPR013087 -
Glsi05g0607 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Glsi05g0607 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 363 385 IPR013087 -
Glsi05g0607 535 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 395 - -
Glsi05g0607 535 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Glsi05g0607 535 Gene3D Classic Zinc Finger 69 143 - -
Glsi05g0607 535 Gene3D Classic Zinc Finger 1 61 - -
Glsi05g0607 535 SMART c2h2final6 90 112 IPR013087 -
Glsi05g0607 535 SMART c2h2final6 6 28 IPR013087 -
Glsi05g0607 535 SMART c2h2final6 363 385 IPR013087 -
Glsi05g0607 535 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Glsi05g0607 535 SUPERFAMILY beta-beta-alpha zinc fingers 91 385 IPR036236 -
Glsi05g0607 535 MobiDBLite consensus disorder prediction 327 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0607 Glsi-ChrGlsi05 56620217 56624083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0607 1 400 C2H2 Transcription Factor Family AT1G26610 39.341 1.20e-74 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi05g0607 zf-C2H2_6 6.6e-06 CL0361