Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0602 ATGTCTCCTGCTCTTTCGTCTCTTGCCTTTGTCACTTTGCTAAGGAAGGCTAATGAGGTATTAGAGTTTCTTTCTTCTTTTTTTTGTTTTCTAGTTGAATTTTTAGCCGTGATCACAATGAATTCGGAGGTGAAGTATGCATCTGTAATCAAGATTATTGGTAGGACAGGGTCAAGAGGGCAAGTGACACAGGAAACTCGGAAAGGACAAATGGGAAGAGATTCCTATGGGTGCAGTTCCAACAGGAATCGATTGTGGGATTCAATATCTTCGGGAATTCTGTATTTTGCTGTTACTGCATGCGCTTGCGCTGCTTCTAGATTGTCAATTCAGAATTGGCACTTCCACGATTTGGACATGAGAAGCTCCTGGTTTAATAAATTTTCCTTCATTTTTGGCCCTAGACCGCCAGTGAGCTGGTTAGTCTTGTGCCTAATTAGCCTGCTCACACTAATTTTTGTCTTAGATACGTCCTCTTCAAATAACATTGACTCAGTACGTCACACTCCTGTATCTCTCATCTATTCAAATTATAGAAGGATAAAAGAGCTCGCAGCAGTTGATTATTTGGAGTTAAGGTCCTTATCATTGGGTGTCACTCAGCAAAGAGAACATGACCTTTGTGGCAAGGAGAGAGAAAACTTTGTGCCTTGCTACAATATTTCAGCAAACTTGTTAGCAGGCTTTCAAGGAGGTGAGCAGTTTGATCGGCATTGTGAATTGTCCAGAGAAAGTGAGAGGTGTTTGGTTCGACCTCCTAAGGACTATAAGATTCCGTTGAGATGGCCAGCTGGTAGGGATGTTATATGGAGTGGAAACGTGAAGATAACCAAAGACCAATTTCTTTCATCTGGTAGTATGACCAAAAGGTTAATGCTACTAGAAGAGAATCAAATTGCTTTTCACTCGGATGATGGTTTGATCTTTGGCGGTGTGAAAGACTATTCTCGCCAACTAGCTGAGATGATAGGGCTAGGAAATGACACTGAATTTCCTCAAGCTGGTATTCGTACTATACTAGACATTGATTGTGGATTTGGTAGCTTTGGAGCTCATTTGGCCCCACTAAAATTGATGGCAGTTTGTATTGCGGCATATGAGGCAACTGGCAGCCAGGTTCAATTGGCCCTTGAGAGAGGTCTTCCTGCAATGATTGGCAACTTTATTGCAAGACAGCTTCCATATCCATCATTATCATTTGATATGGTTCACTGTGCCGAGTGTGGTATCATTTGGCATGAAAAAGATGGACTGTTCCTTATAGAAGTTGACCGTGTTCTTAAACCTGGAGGATACTTTGTTTTAACCTCACCCACAAGCAGGCCACAGGGAAGTTCATCAGAGGTGAAAAAGAGAATCAAGTTGACCCCAATGGAAGAGCTGACCCAACAAATCTGTTGGACTCTTCTAGCTCAGCAAGATGAGACTTTCATCTGGCAGAAGACAGCTGATACTAAATGCTATGCATCTCGCAAGCAGGGTTCCATACCACTTTGTAAAGAAGGGGATGATGCTCGGTCCTATTATAAGCCTCTTGTACCATGTATAAGAGTTCAGTCTGAAGACTTTTATGAAGACTTGCAATTCTGGAGATCAGCTCTCAATAACTATTGGTCTTTGCTTACACCCTTAATTTTCTCCGATCATCCAAAGCGACCTGGAGATGAAGATCCACTGCCTCCATTTAACATGATACGCAATGTGATGGACATGAGTGCTAATTATGGGGGTTTGAATGATGCCCTCCTGGAGGAGAAAAAATCAGTGTGGGTTATGAACGTTGTTCCTGCCCAGGCTTCTAATACACTTCCTCTTATACTAGATAGAGGTTTTGTCGGTGTTATGCATGACTGGTGTGAACCTTTCCCAACCTACCCCCGGACATATGATATGCTTCATGCAAATGGACTTCTCTCACATCTTGCTTCAGAGAGGTGCAGCATGACAGACTTATTCTTAGAGATGGATCGAATACTGCGTCCGGAGGGATGGGTCATTCTTTCTGATAATATGGGAGCTATAGAGATGGCCCGCACGCTTGCAACACAGGTACATTGGGAGGCAAGGGTAATTGACCTTCAGAATGGCAGTGAACAGCGGCTACTTGTTTGCCAGAAACCATTTGTATTTGTCTTAGAGCTGATGAAATTAATTGTACAATTTCAGATGGATTGTTTGGTCGGCACAGCATGATACCCTCGGATTGCCACAACCTTTTTTCAGACGTTAGCATCTTCAATGATGCTAGGAAGCTCTGCTTCTTTTCCTATCTCTAGTGGCCATCTTCTGTCCATATATCTCAAGTCATAA 2310 0.4268 MSPALSSLAFVTLLRKANEVLEFLSSFFCFLVEFLAVITMNSEVKYASVIKIIGRTGSRGQVTQETRKGQMGRDSYGCSSNRNRLWDSISSGILYFAVTACACAASRLSIQNWHFHDLDMRSSWFNKFSFIFGPRPPVSWLVLCLISLLTLIFVLDTSSSNNIDSVRHTPVSLIYSNYRRIKELAAVDYLELRSLSLGVTQQREHDLCGKERENFVPCYNISANLLAGFQGGEQFDRHCELSRESERCLVRPPKDYKIPLRWPAGRDVIWSGNVKITKDQFLSSGSMTKRLMLLEENQIAFHSDDGLIFGGVKDYSRQLAEMIGLGNDTEFPQAGIRTILDIDCGFGSFGAHLAPLKLMAVCIAAYEATGSQVQLALERGLPAMIGNFIARQLPYPSLSFDMVHCAECGIIWHEKDGLFLIEVDRVLKPGGYFVLTSPTSRPQGSSSEVKKRIKLTPMEELTQQICWTLLAQQDETFIWQKTADTKCYASRKQGSIPLCKEGDDARSYYKPLVPCIRVQSEDFYEDLQFWRSALNNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMSANYGGLNDALLEEKKSVWVMNVVPAQASNTLPLILDRGFVGVMHDWCEPFPTYPRTYDMLHANGLLSHLASERCSMTDLFLEMDRILRPEGWVILSDNMGAIEMARTLATQVHWEARVIDLQNGSEQRLLVCQKPFVFVLELMKLIVQFQMDCLVGTAXYPRIATTFFQTLASSMMLGSSASFPISSGHLLSIYLKS 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0602 769 Gene3D - 38 84 IPR012340 -
Glsi05g0602 769 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 196 517 IPR004159 GO:0008168
Glsi05g0602 769 CDD AdoMet_MTases 338 436 - -
Glsi05g0602 769 Gene3D Vaccinia Virus protein VP39 597 703 IPR029063 -
Glsi05g0602 769 Gene3D Vaccinia Virus protein VP39 311 478 IPR029063 -
Glsi05g0602 769 FunFam probable pectin methyltransferase QUA2 297 482 - -
Glsi05g0602 769 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 214 706 IPR004159 GO:0008168
Glsi05g0602 769 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 561 681 IPR029063 -
Glsi05g0602 769 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 247 442 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0602 Glsi-ChrGlsi05 56559034 56569344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0602 40 64 Cytoplasmic Ribosomal Protein Gene Family AT5G64140 68.000 3.03e-06 43.5