Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0600 ATGTCGACGGAGAAGGAGAGAGAGACCCAAGTTTACAAGGCGAAGCTCTCTGAGCAGGCCGAAAGATACGACGAAATGGTTGAGTGTATGAAGAAAGTGGCAAAACTTGATCTTGAGCTTACTGTGGAAGAGAGAAACCTCCTTTCAGTGGGATATAAAAATGTCATTGGTGCACGGCGAGCATCTTGGCGCATTATGTCTTCAATTGAGCAGAAGGAAGAGTCTAAGGGAAACGAGAACAATGTTAAACTGATCAAGGGTTACCGCCAAAAGGTTGAGGAGGAACTTTCCAAGATTTGCGGTGACATTCTGACAATTATTGACAATCATCTGATTCCCTCTTCCACCTCCGGAGAAGCCACTGTTTTTTACTATAAGATGAAAGGTGACTATTATAGGTATCTTGCTGAGTTCAAGATCGATCAAGAAAGGAAAGAGGCAGCAGAGCAGTCACTGAAAGGATATGAGGCTGCTTCAGCCACTGCAAGCACAGATCTTCCATCAACACACCCAATCCGTCTAGGACTTGCACTCAACTTCTCAGTCTTTTATTATGAGATAATGAACTCACCTGAAAGGGCCTGTCATTTGGCTAAACAAGCCTTCGATGAGGCAATAGCGGAGTTGGACACCTTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGTTGTTGAGAGACAACCTGACTCTGTGGACCTCTGATTTGCCTGAGGATGGAGGTGAAGAGAACTTCAAAGGTGAAGAAGTCAAACCAGCTGAACCTGAGGGCCGATGGTGGTTGATGCTAGCTTTGCTGGAAGGACTACTAAGAAAGGAAAAGCTTCTAGGTTCTTCAGCGGGTCTGCAACTAGCACCAATACTATTGTTTAGGTCAATGCTCCTAGTGCAGTTCGAAAGAGTTAGATTAATACAGTGGAAGAACTCCAAGAGGAGCTGGGTCTTGTTGCCTGCCCTTTCACCACTTATGGTGGAGTTAGGGTTGTTGCTAATCTTGGCCAATATTGAAGTGAAAACTATAGGGTTGGTTGGTGGGAACCTGGCTGGAAAGACTGGGTCAGCAACTGGCATAAAATACGAGTGTTTAGGTCAATGGTCTTGGTGCAATTTGAATGAGCTAGGTTAA 1131 0.4492 MSTEKERETQVYKAKLSEQAERYDEMVECMKKVAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNENNVKLIKGYRQKVEEELSKICGDILTIIDNHLIPSSTSGEATVFYYKMKGDYYRYLAEFKIDQERKEAAEQSLKGYEAASATASTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENFKGEEVKPAEPEGRWWLMLALLEGLLRKEKLLGSSAGLQLAPILLFRSMLLVQFERVRLIQWKNSKRSWVLLPALSPLMVELGLLLILANIEVKTIGLVGGNLAGKTGSATGIKYECLGQWSWCNLNELG 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0600 376 FunFam 14-3-3 protein epsilon 1 248 - -
Glsi05g0600 376 SMART 1433_4 7 248 IPR023410 -
Glsi05g0600 376 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Glsi05g0600 376 PANTHER 14-3-3 PROTEIN 7 237 IPR000308 -
Glsi05g0600 376 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Glsi05g0600 376 Gene3D - 1 248 IPR036815 -
Glsi05g0600 376 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Glsi05g0600 376 Coils Coil 195 215 - -
Glsi05g0600 376 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Glsi05g0600 376 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Glsi05g0600 376 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Glsi05g0600 376 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Glsi05g0600 376 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Glsi05g0600 376 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Glsi05g0600 376 Pfam 14-3-3 protein 13 235 IPR023410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0600 Glsi-ChrGlsi05 56546599 56551929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0600 3 253 14-3-3 family AT1G26480 88.845 4.77e-165 461