Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0579 ATGGCGATGCAAGGCGTGCAGAAGAACACACTATATGTGGGTGGGTTAGCGGAGGAGGTGAACGAGGCTATCCTTCATGCTGCGTTCATACCCTTTGGGGACATCAAGGATGTGAAGACGCCGCTGGACCAGGCTACCCAGAAGCACCGTTCTTTTGGATTCGTCACCTTCTTGGAGAGAGAGGACGCTTCTGCCGCCATGGACAACATGGACGGCGCTGAGCTTTATGGCCGAGTTCTCACTGTCAACTACGCCCTGCCTGAGCGCATTAAGGGTGGTGAACAGGGTTGGGCTGCACAGCCAATTTGGGCGGATGCGGATACGTGGTTTGAGCGGCAGCAACAAGAAGAGGAAATGCGCCGTATTGAGGCAGAGAATCGAGCTGCAATGCAGGCTGCAGAAGACATACATAGAAAACAATTAGCCCAAGAGCGAGAAGGAGAAAAGGAAGAGGAAATTGAGATCAAGGATGACCCCATGGCAAAGGCTGAAGCAGAGGACACAAGAGGAGAAGAAAATGAGAGAAGAAAAATGCTTGAATATGCATAA 549 0.5137 MAMQGVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDIHRKQLAQEREGEKEEEIEIKDDPMAKAEAEDTRGEENERRKMLEYA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0579 182 Gene3D - 2 127 IPR012677 -
Glsi05g0579 182 MobiDBLite consensus disorder prediction 136 182 - -
Glsi05g0579 182 FunFam Peptidyl-prolyl cis-trans isomerase 1 154 - -
Glsi05g0579 182 CDD RRM_PPIE 11 85 IPR034168 GO:0003723
Glsi05g0579 182 SMART rrm1_1 10 83 IPR000504 GO:0003723
Glsi05g0579 182 Coils Coil 112 139 - -
Glsi05g0579 182 SUPERFAMILY RNA-binding domain, RBD 6 96 IPR035979 GO:0003676
Glsi05g0579 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Glsi05g0579 182 PANTHER ATPASE E1 3 169 - -
Glsi05g0579 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0579 Glsi-ChrGlsi05 56233551 56237607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0579 9 87 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.71e-11 58.9