Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0570 ATGGAATCTTGGAGTTACGCCTCAGAAGAGAAAGGCTATTTGCTTTCTGATGAAATGGATTTTTCACTTGAAGCTTTTATGAGAGGTAGAAAAGCATTGGTTGACTGGGACAACAAAGCTTCCTGTAACTTTGAGAAAGATGAATTTAGTTCAGATGGAGAGGTAGTTAAAAGCATGGAAGTTCTTGACTTGGGATTTTCTGATTTGTTTCGAACCGGTAACCAGCCACTGAACACATCCAACTTTGAGCTAGATAGAAATTCTAGTAAAAGAGTGAATTCCCCTACCCATGTTATTGCTCTGGATTCATCTTTGGTGGAAGAAGAATCTGAGTTGAAGCATTCAGGTTCTCTAGTTGAATCTAAAATTCATGATTCATCGCTGATTGATTTGAAGCTAGGGAGATTAGCAGATTGTAAAGAAGCAAGTAGTGATAAAATTGCAAAGAGAGTTCGCACCTCCAGCTCACCCACTCAGACACCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACAGCCAAAGTCATTGTTAATGGCATTGAGCAGAGGTTTTGTCAGCAGTGTAGCAGGTTCCATTTGCTAGCTGAGTTTGATGAGGACAAGCGCAGTTGTCGTAGACGCCTAGCAGGACACAATGAACGCCGAAGGAAGCCTCAGTTTGATTACATGTCTTGTAAACCACACAAGATGCTTCAGTCATATCAAGGTACCAAATATATGGGGCCTTCATTCCAGAAGAGACCCCAGTTGGCCTTTGAAGACATGTTCCGAAGTGGCATTTTTACCCCAGGAAAGTATGAACAAACCAGGCAGAGTGGACATATCAAATTTGAAGCGGAATCAATCTATTGTCCTCAACTGGCACCCATCATACACGATCAGGAGTTATCTAGGGCCTCAAACACTAGCTGTGCTCTCTCTCTTCTGTCAGTTCAGTCCCAGAACCTGTCATGTCTCTCTGCAGAAAACCCAGTTTCTAGTTCCCTTATGTTTCCGGGCATCCACACGCACAGCAGTGATGACCGAGTTTCTGAAATACCTTTAGGGGTAAACTCTCTGGATAAATATGCACAAAATGAGTCTTCTTCACATGGGATGAACTCTATGGAAGCTGTCAAGAATGGATCCATCATGCTCTCTGATGCTGGTCATGCTGCTCATCTTCAAGTCCACAATATATGCCAACCATCAGATCTTTCTCGTGAACATGGGACCACTCTTGACCTGTTCCAATTGTCATCACATCTTCGAAGGGTGGAGCATCAAAGAAATTCATTTTTTCCGTAA 1344 0.4241 MESWSYASEEKGYLLSDEMDFSLEAFMRGRKALVDWDNKASCNFEKDEFSSDGEVVKSMEVLDLGFSDLFRTGNQPLNTSNFELDRNSSKRVNSPTHVIALDSSLVEEESELKHSGSLVESKIHDSSLIDLKLGRLADCKEASSDKIAKRVRTSSSPTQTPVCQVYGCNMDLSSSKEYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEDKRSCRRRLAGHNERRRKPQFDYMSCKPHKMLQSYQGTKYMGPSFQKRPQLAFEDMFRSGIFTPGKYEQTRQSGHIKFEAESIYCPQLAPIIHDQELSRASNTSCALSLLSVQSQNLSCLSAENPVSSSLMFPGIHTHSSDDRVSEIPLGVNSLDKYAQNESSSHGMNSMEAVKNGSIMLSDAGHAAHLQVHNICQPSDLSREHGTTLDLFQLSSHLRRVEHQRNSFFP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0570 447 ProSiteProfiles Zinc finger SBP-type profile. 160 237 IPR004333 GO:0003677
Glsi05g0570 447 Pfam SBP domain 163 236 IPR004333 GO:0003677
Glsi05g0570 447 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 115 416 IPR044817 GO:0003677
Glsi05g0570 447 Gene3D - 153 224 IPR036893 GO:0003677|GO:0005634
Glsi05g0570 447 SUPERFAMILY SBT domain 161 242 IPR036893 GO:0003677|GO:0005634
Glsi05g0570 447 FunFam Squamosa promoter-binding-like protein 14 154 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0570 Glsi-ChrGlsi05 56162895 56167303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0570 1 443 SBP-box Gene Family AT1G69170 32.558 3.82e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi05g0570 SBP 1e-31 No_clan