Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0568 ATGGGAAGAGGACGAGTGGAGCTGAAGAGGATTGAGAACAAGATAAATCGGCAAGTGACATTTGCAAAGAGAAGGAATGGGCTTCTCAAAAAGGCTTACGAGCTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCAACTCTAGCATGACCAAGACAATTGAACGGTATCAAAGATGCAGCTATGGAGCCTTGGAAACAGAACAAACTGCAATAGAGACACAGAGGTGCTACCAAGAGTATCTCAAGCTGAAATCAAATGTTGAGGCACTACAGCGTTCACAAAGAAATCTCCTCGGGGAAGAATTGGAACAGTTAGGCATAAAAGAGCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCATTAAAGCAAATCAGGTCAAACAAGACACAACATATGCTTGATCAACTCTCTGATTTACACAGGAAGGAAGAGATGCTACTGGAAACTAACAAAATCTTGAATAGCAAGGTACCAGAAACCTCATTACTCTTTTCATGGGAGGGCGTTAATATAGCCCTTCAATCGTCATGGGAAGCCGGGGAGCAAAATGCTCCATACAGCCACCACCCTCCACAATACGAGGAATTCATTGAGATAGTACAATGCAATCCTTCATTGCAGATTGGCTATGGCTCTGCTATGGGGAATGAAGCTACAGAAGCTGCAGGAACCTCAGCCCAAAACGCAAGTCAGGAATTCATGCCTGCAGCATGGATGGCATGA 765 0.4536 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSNSSMTKTIERYQRCSYGALETEQTAIETQRCYQEYLKLKSNVEALQRSQRNLLGEELEQLGIKELEQLERQLDSSLKQIRSNKTQHMLDQLSDLHRKEEMLLETNKILNSKVPETSLLFSWEGVNIALQSSWEAGEQNAPYSHHPPQYEEFIEIVQCNPSLQIGYGSAMGNEATEAAGTSAQNASQEFMPAAWMA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0568 254 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Glsi05g0568 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi05g0568 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi05g0568 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi05g0568 254 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Glsi05g0568 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0568 254 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g0568 254 Coils Coil 121 144 - -
Glsi05g0568 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi05g0568 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi05g0568 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0568 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Glsi05g0568 254 FunFam MADS-box transcription factor 1 13 88 - -
Glsi05g0568 254 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g0568 254 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0568 Glsi-ChrGlsi05 56099813 56109965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0568 1 223 MADS-box Gene Family AT5G15800 65.625 7.35e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi05g0568 K-box 2.7e-26 No_clan