Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0567 ATGGGGAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACTTTCTCCAAAAGGAGAAATGGTTTGCTCAAGAAAGCCCATGAGATCTCTGTGCTCTGTGACGCTGAGGTGGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGACTATGCCACTGATTCTTGCATGGAGAAGATACTTGAACGCTATGAAAGATATGCCTATGCAGAGAGAAAGCTTGCGGGAAATGATTCTGAGACGCAGCAGGGAAACTGGACCATTGATTATGCTAGACTCAAGGCCAAGATAGAGCTTTTGCAGAGAAACCAAAGGCACTATTTGGGGGAGGATCTGGGTTCACTGAGTCTGAAAGAGCTTCAGAGTCTAGAGCAACAGTTAGAAACTGGCCTCAAACTTGTCCGTACACGCAAAAACCAGCTCATGTACGAGTCGATTTCTGAGCTCCAGAAAAAGGAGAAAGTGATACAGGAGGAGAATACCGTGCTAGCAAAGAAGATAAAGGAGAAAGAAAAGAATGCTGCACAAGCACAGCAGGCACAATGGGAGCAGCCAAACCATGGAGCTAATCCATCTTTCTTACTTCCACATCCACTTCCCAGTTTAAACATGGGTGGGAATTACCAAGAGGAAGGAGCTGATGTAGTGGGAAGGAACGATCTTGACCTGACCCTGGAGCCACTTTATAACTGCCACCTTGGATTCTTTGCTACATGA 735 0.4626 MGRGRVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSHKGKLFDYATDSCMEKILERYERYAYAERKLAGNDSETQQGNWTIDYARLKAKIELLQRNQRHYLGEDLGSLSLKELQSLEQQLETGLKLVRTRKNQLMYESISELQKKEKVIQEENTVLAKKIKEKEKNAAQAQQAQWEQPNHGANPSFLLPHPLPSLNMGGNYQEEGADVVGRNDLDLTLEPLYNCHLGFFAT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0567 244 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Glsi05g0567 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0567 244 Coils Coil 166 186 - -
Glsi05g0567 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Glsi05g0567 244 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Glsi05g0567 244 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Glsi05g0567 244 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Glsi05g0567 244 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g0567 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi05g0567 244 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g0567 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi05g0567 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi05g0567 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi05g0567 244 MobiDBLite consensus disorder prediction 180 194 - -
Glsi05g0567 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0567 244 MobiDBLite consensus disorder prediction 180 202 - -
Glsi05g0567 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0567 Glsi-ChrGlsi05 56075351 56084663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0567 1 244 MADS-box Gene Family AT1G26310 64.591 6.61e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi05g0567 K-box 1e-29 No_clan