Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0553 ATGAACAGCCCGGTAGATGTACTGAAGAGGAGAAAATATAACAACTCTGAAGCTTCCACTTACAGGGCTTCGAGGAGAGGATGCTGCAGCAACAACGGAGTCTCCACTACGCTGATGCTCTACGAGGACCCTTGGACGATAAAGAAGACACTGACTGATAGTGATCTGGGAATCTCCAGCAGGCTCTTGTTGGCCAGAGAGTTGGTCAAAAACCAGATTTTGCCTAGGCTGGGCGTTGATAATGCAAGAGCCGCCGAGACTGAAGAAGGCACCCTAGTTAGGGTTTGGGACGTGGATTCCAGATCCATGCACCACCTGCTCCTCAAGAGATGGTCTTCATCCAAGAGCTATGTTTTTATTGGAAAGTGGAGCCAAGATTTCGTGAAAAGAAGGGAGCTCAAGAAAGGGGACGAGATCGGATTCCAGTGGGATCCATATAACTGCGTTTTCAACTTCTGCGTTCTTAAACGGGCTATGCCGACTTGA 486 0.4877 MNSPVDVLKRRKYNNSEASTYRASRRGCCSNNGVSTTLMLYEDPWTIKKTLTDSDLGISSRLLLARELVKNQILPRLGVDNARAAETEEGTLVRVWDVDSRSMHHLLLKRWSSSKSYVFIGKWSQDFVKRRELKKGDEIGFQWDPYNCVFNFCVLKRAMPT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0553 161 Gene3D - 42 158 IPR015300 -
Glsi05g0553 161 SUPERFAMILY DNA-binding pseudobarrel domain 43 154 IPR015300 -
Glsi05g0553 161 CDD B3_DNA 45 156 IPR003340 GO:0003677
Glsi05g0553 161 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 20 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0553 Glsi-ChrGlsi05 55861393 55861878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0553 5 142 B3 DNA Binding Superfamily AT1G25560 26.351 4.43e-07 46.6