Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0535 ATGAGAGCGGGGAAAAGTAATCAAGAAGACGACGAGTACGAGGAGGAAGACTTCGGTTCTAAGAAAGAAGGCCCTTCGTCTGCGCCTAACAGCAATAACGCCAACAAAGATGGAAAAGCTATGGATAAGGCTACTGCTATAAGATCAAAACATTCAGTAACTGAGCAGCGAAGAAGGAGCAAGATAAATGAGAGATTCCAGATATTGAGGGATCTAATACCTCATAGTGATCAAAAGAGGGATACGGCATCATTCCTATTAGAGGTGATTGAGTATGTCCAGTACTTACAGGAGAAGTTACAAAAGTATGAAGGCTCATATCAGGGTTGGGGTCATGAGCCCACAAAATTGATTCCATGGAGAAACAGTCACTGGCGTGGTCAAAGCTTTGTTGGTCAACCTCAAGCTGTAAAGAATGGTTCCGGTCCAGTATCACCTTTTCCTGGGAAGTTTGATGAAGGCAACATTAGTGTCTCTCCAACTATGCTTAGTGGCTCCCAGAATATGATAGGTCCTGAACAGAGCAGGGATATTGTCAGCAAAACAGCAGAGAGGCAACCTGACTTAGAAAGCAAGGGGATACCCCTTCCCATGCCTATGCATGCTAACATGTCTGTTCCCATCAGAAGCGATGGTGCACCTGCCCATCCTCTACAGGGGCCTGTTTCTGATGCACAATCAACTGAGTGTCCGGCCACTAGTGAACTACAGAACCCACAGGATGAACTGACAATAGAAGGAGGAACAATTAACATCTCTAGTGTATACTCTCAAGGGCTGTTACACAATCTGACTCATGCGCTACAGAGTGCTGGTTTAGATCTGTCACAGGCTAGCATCTCAGTTCAAATTAATCTTGGAAAGCGAGCAAACCAAGGACCAGGCTGTGGGACATCCGCTTCTAAGAATCATGATAATCCCCCTTCTAGCAATCAAGTAATTGCACATTTTAGAGATACAGGCAGTGGGGAAGACACAGATCAAGCTCAGAAACGGCTGAAAACATAA 1008 0.4504 MRAGKSNQEDDEYEEEDFGSKKEGPSSAPNSNNANKDGKAMDKATAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKLQKYEGSYQGWGHEPTKLIPWRNSHWRGQSFVGQPQAVKNGSGPVSPFPGKFDEGNISVSPTMLSGSQNMIGPEQSRDIVSKTAERQPDLESKGIPLPMPMHANMSVPIRSDGAPAHPLQGPVSDAQSTECPATSELQNPQDELTIEGGTINISSVYSQGLLHNLTHALQSAGLDLSQASISVQINLGKRANQGPGCGTSASKNHDNPPSSNQVIAHFRDTGSGEDTDQAQKRLKT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0535 335 MobiDBLite consensus disorder prediction 221 239 - -
Glsi05g0535 335 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 335 IPR044295 GO:0003700|GO:0006351|GO:0046983
Glsi05g0535 335 MobiDBLite consensus disorder prediction 291 335 - -
Glsi05g0535 335 MobiDBLite consensus disorder prediction 1 59 - -
Glsi05g0535 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 117 IPR036638 GO:0046983
Glsi05g0535 335 MobiDBLite consensus disorder prediction 41 59 - -
Glsi05g0535 335 FunFam BHLH domain class transcription factor 44 116 - -
Glsi05g0535 335 MobiDBLite consensus disorder prediction 211 239 - -
Glsi05g0535 335 CDD bHLH_AtBIM_like 46 121 - -
Glsi05g0535 335 SMART finulus 52 102 IPR011598 GO:0046983
Glsi05g0535 335 MobiDBLite consensus disorder prediction 291 317 - -
Glsi05g0535 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Glsi05g0535 335 MobiDBLite consensus disorder prediction 320 335 - -
Glsi05g0535 335 MobiDBLite consensus disorder prediction 24 38 - -
Glsi05g0535 335 Gene3D - 44 114 IPR036638 GO:0046983
Glsi05g0535 335 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0535 Glsi-ChrGlsi05 55438455 55443590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0535 1 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 54.006 1.54e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g0535 HLH 1.8e-13 No_clan