Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0522 ATGAATTATTCAACTAGTATACCCTCGGATTGGCGGTTTGGGGGTGCCAATCTTGCGAATACGTCTGTGGGTTTGTTTCGCATGGGAAATTCAATGAATATTGGCAAAGGGGATCTAATTGGTTCTTCTTCCTGTTCTTCTGCTTCAATGGCAGACTCGCATGGTCCAAACTTCTGGGCCCATGCCACCAACTCCCAAAACTTGGGTTTTTGTGACATTAGTGTCCTGAATAATGGTAGCCCTTCAAACACAATTGGGATCAGAAAAGATAGCCTTGCTTTTTCAAGAACTGGTCATGATAGAACACTTGAAATGGGTTGGAATTCTGCAAATTTTATGTTAAAAGGGGACGCTTTCTTACCAAATGGACCAGGAATACTTCTCCAGAGCTTATCTCAGTTTCCAACTGATTCTGGCTTTATTCAACGTGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTGGGGATATGGTGAACTCAGTTGGGATTCCTCAATCCATGGGTCTGTATGCTAGGAATGGGGGGACAATGCATGAAGCGAGAGATGCTCTTACAGACCATGAAATAAAAACAGCTGCTCCTGGAGGAAAATCTCAAGAAAGTGATCTGAATGTAGGTGAAGCTGCAAAAGATGCGTTTCCATCTGCTGAGCATCTAGCTACTAAAGGAAACCCACTCAAGAATGACAAAAGAAGTGAAAGGCATGTAAAATCTCAAGATGAAGCAAGACAAGCTCTTGGTAGGTCTGCTAATGAGTCTGATGGAGCTCATTCTAGCAGTGATGAGGGTGCTGGTGGTCAAGATGATTCCCCAATGTTGGAGGATACAAGTGGAGAGCCCTCAACTAAGGGAATAAACTCAAAGAAAAGGAAAAGAAGTGGGCAGGATGCTGGTAATGATAAAGCCAATGGAGCTCCTGAACTGCCTAGTGAAGCTGCAAAGGACAATACTGAAAGTCCACCAAAGGGAGACCAACATCCAACTTCAACAACCAAGACATCTGGGAAGAATGCCAAACATGGGTCTCAAACTTCTGATCCACCAAAGGAGGAATACATACATGTTAGGGCTCGTCGAGGCCAAGCAACAAATAGCCATAGTCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGAATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCAGTGATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTGGCAACAGTGAATCCGCGGTTAGATTTTAATATTGAAGGACTTCTTACTAAAGATATTCTTCATCAACGGCCTGGACCTTCGTCTGCACTGGGCTTTTCTCCAGAAATGCCCATGGCTTTCCCTGCATTACATCCATCTCAACCAGGACTTGTTCATTCAACTCTTCCTGGCATGGCAAATTCATCTGATATACTTCGGAGAGCAGTTCATCCACCATTGGCACCCTTGACTGGAGGATTCAAGGAGCCTAGTCAGCTACCTGATGTATGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAACAACTGCTCCCCTTAGTAGTCAAGACGTGGATGGTTCTGTTCCAGCAGATCAGATGAAAGTTGAACTATGA 1650 0.4412 MNYSTSIPSDWRFGGANLANTSVGLFRMGNSMNIGKGDLIGSSSCSSASMADSHGPNFWAHATNSQNLGFCDISVLNNGSPSNTIGIRKDSLAFSRTGHDRTLEMGWNSANFMLKGDAFLPNGPGILLQSLSQFPTDSGFIQRAARFSCFSGGNFGDMVNSVGIPQSMGLYARNGGTMHEARDALTDHEIKTAAPGGKSQESDLNVGEAAKDAFPSAEHLATKGNPLKNDKRSERHVKSQDEARQALGRSANESDGAHSSSDEGAGGQDDSPMLEDTSGEPSTKGINSKKRKRSGQDAGNDKANGAPELPSEAAKDNTESPPKGDQHPTSTTKTSGKNAKHGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLTKDILHQRPGPSSALGFSPEMPMAFPALHPSQPGLVHSTLPGMANSSDILRRAVHPPLAPLTGGFKEPSQLPDVWEDELHNVVQMSFATTAPLSSQDVDGSVPADQMKVEL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0522 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 412 IPR011598 GO:0046983
Glsi05g0522 549 Pfam Helix-loop-helix DNA-binding domain 365 413 IPR011598 GO:0046983
Glsi05g0522 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 431 IPR036638 GO:0046983
Glsi05g0522 549 MobiDBLite consensus disorder prediction 323 343 - -
Glsi05g0522 549 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 244 459 IPR024097 GO:0006355
Glsi05g0522 549 MobiDBLite consensus disorder prediction 224 243 - -
Glsi05g0522 549 SMART finulus 368 418 IPR011598 GO:0046983
Glsi05g0522 549 MobiDBLite consensus disorder prediction 214 351 - -
Glsi05g0522 549 Gene3D - 359 432 IPR036638 GO:0046983
Glsi05g0522 549 MobiDBLite consensus disorder prediction 252 266 - -
Glsi05g0522 549 FunFam Basic helix-loop-helix transcription factor 359 431 - -
Glsi05g0522 549 CDD bHLH_AtBPE_like 352 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0522 Glsi-ChrGlsi05 55353829 55356604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0522 41 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 45.808 1.72e-119 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g0522 HLH 7.1e-06 No_clan