Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0495 ATGAGCTTTCTCATCAGATTCCTCTTAGCAGTTCCCTTATTTTCCATCCAAATCTTCATCATGCTCTTCGACTACCTCAAGCTAATTTACACTAACCTGAAATGGGTTTTAGATTTCCTTGTCTACCATCCCTTCTATAAGCTCCGCGAGCCTCGTGATCGATTCCATACCATTATCGAAGAAGAAGAAGAAGAAGTGCAGATATGGCATTATCATGATGCTGAAGAAGAAGATGTAGATTGTGCGGTGTGTCTATGCAAGATTGCTGAAGGAGAAGCCGTTAGAGTTTTGAGGTGTGAGCATGTCTTCCACAGAGATTGTTTGGAGAGATGGATTCGGCTCAAGAATCCTACTTGCCCTCTTTGTAGGAACTTTGTGGGTTCTGGGCGAAGGGTAATCGGTGAGGTTGGAGCAGAAGTGCTTTTCTATAGGTTTTGTCCTTTCGGTGATTCCGATGAGCGTGAGTCATGGTGGCTCCGGTGA 483 0.4451 MSFLIRFLLAVPLFSIQIFIMLFDYLKLIYTNLKWVLDFLVYHPFYKLREPRDRFHTIIEEEEEEVQIWHYHDAEEEDVDCAVCLCKIAEGEAVRVLRCEHVFHRDCLERWIRLKNPTCPLCRNFVGSGRRVIGEVGAEVLFYRFCPFGDSDERESWWLR 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0495 160 SUPERFAMILY RING/U-box 66 127 - -
Glsi05g0495 160 SMART ring_2 81 122 IPR001841 -
Glsi05g0495 160 Pfam Ring finger domain 80 123 IPR001841 -
Glsi05g0495 160 PANTHER - 20 127 - -
Glsi05g0495 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 128 IPR013083 -
Glsi05g0495 160 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Glsi05g0495 160 SMART ringv_2 80 123 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0495 Glsi-ChrGlsi05 55025289 55025771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0495 80 128 C3H Transcription Factor Family AT1G15100 59.184 1.06e-13 63.2