Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0494 ATGGTTTCAGACCCACCATCACTTCCTTCACTACCAGTTCTGACTGTCACTACAGCAGAGCATAATGTGGGGCTTTCTATGGAAACCTTACCGTACCCTTCCTGTGAAAAAGATGCTAAAACCCATTTGGTGGGGTTCACCTTGGAAAACCCATATGATAATGGCAATACCCATTTGGTGGAAGAGGCAAATCATAGCTCTAGTCAGGCCTTTTCCTTTGACCAATCCAACTGGGACGGTAATATGCAAAATCTTCAGGATCAACATCAACCATTTCCTGTCCCTACACCTCCAGATCTGCTTAATCTCCTCTACTTGCCCTGTAGCTCACCTATCTCTTTTGAAAACCCAACCCACAAGACCATCAATCTTCGAAATCCTTCTGGCCATGGCGAATTGCATGACCCCTTTTTGCATTTGAACCTGCCTGCACATCCTCCTCCAGCATTAAGAGAGTTGTTTCAGTCTCTACCCCATGGCTACATCTTGCCACCAGCAGCTTCAAAAGATGATTTTCTGTTTGCTGGAGAGGGTGATAGAGAAGGCAGTGAAGATGAAAGAGATTTTGATAATGGAATAGTGCTGGAGTTTACTCAGGACTTGGCTTCTGTAGGTGGAAAAGGAAAAGGCAAAAAGAATAAACAGGTCACTACTGAAAAACAAAGGAGGGTGGAGTTTAGTGGCAAATTTGATGCCTTGAGAGAACTAATCCCAAACCCCACTAAGAATGATAGAGCATCTGTGCTGGGAGATGCCATTGGGTACATCAAAGAGCTGCGTAGAACAGTGAACGATCTCAAACTACTAGTGGATAAAAAGAGATGTGGGAAAGAAAGGATCAAGAAGAGGCACAAGGTCGAAGAAGGAGATGCTTCAGGGGAGTTGGAGAGCCGCAACTTGAAGCCACTGGGTGACCCAGATGATCAAGCCTACAATGGATGCATAAGGAGCTCTTGGCTCCAGAGAAAATCCAAAGACACTGAGGTTGATGTCCGCATCATTGATGACGAGGTGACAATCAAGCTTGTCCAGAGAAAAAAGATCAATTGCTTGCTGTATGCTTCCAAGGTTCTGGATGAACTTCAGCTGGATCTCCAACACGTTGCTGGTGGCCACATTGGTGATTTCTGCAGTTTCTTATTCAACAGCAAGATATATGAAGGTTCTTCAGTTTATGCAAGTGCCATAGCCAACAGGCTTATAGAGGTCATGGACAGAGAAGTTTTCAAGCAGCTTGATACAGAGCCTGCAAGTGGGGATTGGAAAAGTTCTACGGTGTTAGAGGATATTTCTTCACTCGACGACAATTTTCAGCAGGTCGTCGTCTATGTTGTTTGAAGATTTTATAGAAATCATCGAAGTTTTGGTTTGCGAAAAATGGCGATTGATTCATCAGTTCGTTGTGTGTCACATTTGCATCAGCCTTTGCCTTCTCGCTCCGTTCTCCCCTTCTTCAATCGCACCGCATCGAAACCCATTTCCTTCAGCCAAACTCCGACCCCTAGACTCGTCTCGGTTCGGTCTCAGACACCCAGTTCGGATCATGGGTTGGGAGTGGGACCCAAGAGATCGGTCAGCTTCGAGGAGTCTCATTCCTCAATTGGGTTCTCGAGCTCACCCTCCTCCTCATCTTCAGTGATTGATTTTCTCACATTGTGCAATCGGCTTAAGACCACAAAAAGGAAAGGATGGGTCAACCATGGCATAAAGGGCCCTGAATCAATTGCTGACCACATGTATCGCATGGCTTTAATGGCTTTGATTGCCGGTGACCTTCCAGGGCTGAATAGAGAAAGATGTATTAAAATCGCACTTGTGCATGATATTGCAGAAGCAATTGTTGGAGATATAACACCATCTGATGGTGTGCCCAAGGCAGAAAAGAGCAGAAGGGAGCAGGCAGCTTTGAATGAAATGTGTGAAATTCTTGGTGGAGGGATGAGAGCTGAAGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCCTCTTTAGAGGCTACTCTTGTTAAAGATTTTGACAAGGTTGAAATGATTCTACAAGCGCTGGAATATGAAATGGAACATGGAAAGGTGCTGGATGAATTTTACCTTTCAACAGCAGGGAAGTTTCAGACTGAAACAGGAAAAAATTGGGCAGCTGAGATCATTTCAAGAAGAAAATCTTTGTTAGCAAAGAAGTTGAGTTGA 2190 0.4443 MVSDPPSLPSLPVLTVTTAEHNVGLSMETLPYPSCEKDAKTHLVGFTLENPYDNGNTHLVEEANHSSSQAFSFDQSNWDGNMQNLQDQHQPFPVPTPPDLLNLLYLPCSSPISFENPTHKTINLRNPSGHGELHDPFLHLNLPAHPPPALRELFQSLPHGYILPPAASKDDFLFAGEGDREGSEDERDFDNGIVLEFTQDLASVGGKGKGKKNKQVTTEKQRRVEFSGKFDALRELIPNPTKNDRASVLGDAIGYIKELRRTVNDLKLLVDKKRCGKERIKKRHKVEEGDASGELESRNLKPLGDPDDQAYNGCIRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKINCLLYASKVLDELQLDLQHVAGGHIGDFCSFLFNSKIYEGSSVYASAIANRLIEVMDREVFKQLDTEPASGDWKSSTVLEDISSLDDNFQQVVVYVVXRFYRNHRSFGLRKMAIDSSVRCVSHLHQPLPSRSVLPFFNRTASKPISFSQTPTPRLVSVRSQTPSSDHGLGVGPKRSVSFEESHSSIGFSSSPSSSSSVIDFLTLCNRLKTTKRKGWVNHGIKGPESIADHMYRMALMALIAGDLPGLNRERCIKIALVHDIAEAIVGDITPSDGVPKAEKSRREQAALNEMCEILGGGMRAEEIKELWEEYENNSSLEATLVKDFDKVEMILQALEYEMEHGKVLDEFYLSTAGKFQTETGKNWAAEIISRRKSLLAKKLS 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0494 729 SMART finulus 216 265 IPR011598 GO:0046983
Glsi05g0494 729 MobiDBLite consensus disorder prediction 71 96 - -
Glsi05g0494 729 FunFam HD domain-containing protein 2 535 724 - -
Glsi05g0494 729 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Glsi05g0494 729 SMART hd_13 571 688 IPR003607 -
Glsi05g0494 729 Pfam HD domain 553 708 IPR006674 -
Glsi05g0494 729 PANTHER TRANSCRIPTION FACTOR BHLH91 53 408 IPR045895 GO:0006355|GO:0048658
Glsi05g0494 729 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 276 IPR036638 GO:0046983
Glsi05g0494 729 SUPERFAMILY HD-domain/PDEase-like 545 723 - -
Glsi05g0494 729 ProSiteProfiles HD domain profile. 575 679 IPR006674 -
Glsi05g0494 729 MobiDBLite consensus disorder prediction 71 90 - -
Glsi05g0494 729 CDD bHLH_AtMYC1_like 216 279 IPR045896 -
Glsi05g0494 729 Gene3D Hypothetical protein af1432 535 728 - -
Glsi05g0494 729 Gene3D - 208 286 IPR036638 GO:0046983
Glsi05g0494 729 Pfam Helix-loop-helix DNA-binding domain 213 259 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0494 Glsi-ChrGlsi05 54950479 54959784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0494 55 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 43.523 3.79e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g0494 HD_3 2.7e-46 CL0237