Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0493 ATGTCGGCGGTGTCACCGTCTCCGGCGTCTTCTACGGCCACACCACCCCCGCAGCCCTCTTCAACTGCTCCAGGCAGTTCTACTTCACCACTACCACAGCCTAATGTGAACCCTAAGCCTCCAACATCATCGAGCCCTCCAGCTCAGTCCCCACCTCCGGCCACTCCATCAGCTCCTCCTCCTCCTTCTGTGCCATCGTCACCTCCGCCATCACAGCCACCTCAGGCATCACCTCCCCCTCCATCTGGAACTCCACCCCCATTGTCACCATCTGTGGCTCCAACTCCTCCTTCACAATCAGTTTCACCCACATCACCACCACCAGCCCCATCTAATACTCCCCCTCCATCTAGAACTCCACCCCCATTGTCACCTTCTGTGACTCCAACTCCTCCTTCACAATCAGTTTCACCCACATCCCCACCACCAGCTCCATCTAATGCTCCCCCACCATCTTCTCCTGTACGCCCATCACCGCCGCCACAATCACTGGTTCCACCAGTAAGTTCTCCTCCGCCAACAAATTCAACAGCGCCACCACCATCTAAATCGCCAGTGCCTTCACCTCCTACACCATCAGCTAACCCTCCAAACAACTCAACTCCACCCCCAGCATCCAGGCCCCCTGAAAATTCACCCCCTCCTTCAGAAGCTGTGCCACCCCCGGGAAATTCACCTCCACGGCCAGCATCTGCTCCGCCACCCAAGAATTCGCCTCCACCGCCAGCATCTGTGCCGTCACCCAAGAATTCACCCCCACCGTCGGCAGCTGTGCCATCTCAAGAGTCATCTCCTCCACCGGCGTCAACTCCTAGAAATTCACCTCCTGCTCCAGCATCTAGACCTCCAAGTGGTGCACCCCATCCCCCAAGGGAAAGCCCTCCTACTCCACCTAATTCTCAACCAACTTCATCTCCTTCAAATTCTACACCGAAGTCATCTCCTCCACCACCCTTAATTCGATTGACTCCGCCTCCGTCCTCACTTGTTTCACCACCACGTTCTCAAGCTCGCACCCCACCATCAGAAAATGGAGCCGAAAGTTCAAACTCCGGAGATAGTGGGGGCATCGGTACCGGTGCTGCAGTGGCAATTGGTGTAGTGACAGGAATTCTAGTGCTTACCTTCGTTGGAATTGCTATCTGGTGCATGAGGAGGCAAAAGAAACGGAGGCCTGTTAATGGTGGTTACGTCATGCCATCCACTCTCGCCTCAACACCCGAGTCAGACTCGTCCTTTTTTAAGACACATTCTTCAGCTCCTCTTGTACAAAGCGGTTCTGGAAGTGATTCTGTGTATACACCATCGGATTCAGGCGGACTAGGCAACTCAAGGTCATGGTTTACATATGAAGAACTAGTCAAGGCCACAAATGGTTTTTCATCTCAAAATCTGTTGGGTGAGGGTGGATTTGGTTCTGTATATAAAGGATACCTACCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAAATTGGTGGAGGTCAGGGTGAGAGAGAATTCAAAGCTGAAGTGGAGATTATTAGTCGCATTCATCATCGCCATTTGGTTTCTTTGGTGGGATACTGCATTTTAGATGACAGAAGGCTGCTTGTCTATGATTATGTCCCCAACAATACCCTCTATTATCATCTTCATGGGGAAGGTAGGCCAGTATTGAGCTGGGAAAAACGTGTGAAAATTGCTGCTGGTGCAGCTCGAGGAATTGCTTATCTCCATGAAGACTGCAATCCTCGGATTTTTCACAGGGATATCAAGTCATCAAACATTCTTTTAGATTACAACTTTGATGCTAAAGTCTCAGACTTTGGTCTAGCCAAATTAGCTCTTGATGCAAATTCACATATAACAACGCGTGTCATGGGAACTTTTGGATATGTTGCACCTGAATATGCATCAAGTGGCAAATTGTCTGAGAAGTCTGATGTATATTCTTTTGGGGTCGTGCTTCTGGAGCTTATTACTGGACGGAAGCCTGTAGATGCATCTCAACCCTTGGGGGATGAGAGTCTAGTTGAATGGGCTCGACCTTTGATGAGTTATGCACTTGATAATGAGGAATTTGGAAGTTTGACAGATCCTAGGCTCGAAAGAAACTATGTTGAGAGTGAGATGTTTCGCATGATTGAAATTGCTGCTGGTTGCGTGCGGCATTCGGCTGCCAAAAGGCCTCGAATGGGACAGGTTGTCAGGGCATTTGATAGCTTAGCAACTTCAGATCTAACCAATGGAATGAGACCAGGGGAAAGTGAGGCATTTGACTCTGCGCAGCAATCTGCAGAAATAAGATTGTTTCGGAGGATGGCATTTGGTAGTCAAGATTATAGCACGGACTTTTTTAGCCAGGCTAGTTTGAATACTTAA 2364 0.4966 MSAVSPSPASSTATPPPQPSSTAPGSSTSPLPQPNVNPKPPTSSSPPAQSPPPATPSAPPPPSVPSSPPPSQPPQASPPPPSGTPPPLSPSVAPTPPSQSVSPTSPPPAPSNTPPPSRTPPPLSPSVTPTPPSQSVSPTSPPPAPSNAPPPSSPVRPSPPPQSLVPPVSSPPPTNSTAPPPSKSPVPSPPTPSANPPNNSTPPPASRPPENSPPPSEAVPPPGNSPPRPASAPPPKNSPPPPASVPSPKNSPPPSAAVPSQESSPPPASTPRNSPPAPASRPPSGAPHPPRESPPTPPNSQPTSSPSNSTPKSSPPPPLIRLTPPPSSLVSPPRSQARTPPSENGAESSNSGDSGGIGTGAAVAIGVVTGILVLTFVGIAIWCMRRQKKRRPVNGGYVMPSTLASTPESDSSFFKTHSSAPLVQSGSGSDSVYTPSDSGGLGNSRSWFTYEELVKATNGFSSQNLLGEGGFGSVYKGYLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCILDDRRLLVYDYVPNNTLYYHLHGEGRPVLSWEKRVKIAAGAARGIAYLHEDCNPRIFHRDIKSSNILLDYNFDAKVSDFGLAKLALDANSHITTRVMGTFGYVAPEYASSGKLSEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLMSYALDNEEFGSLTDPRLERNYVESEMFRMIEIAAGCVRHSAAKRPRMGQVVRAFDSLATSDLTNGMRPGESEAFDSAQQSAEIRLFRRMAFGSQDYSTDFFSQASLNT 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0493 787 MobiDBLite consensus disorder prediction 1 354 - -
Glsi05g0493 787 CDD TM_EGFR-like 362 391 - -
Glsi05g0493 787 SMART serkin_6 460 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0493 787 Pfam Protein kinase domain 462 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0493 787 MobiDBLite consensus disorder prediction 31 331 - -
Glsi05g0493 787 ProSiteProfiles Protein kinase domain profile. 460 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0493 787 FunFam Proline-rich receptor-like protein kinase PERK8 432 535 - -
Glsi05g0493 787 Gene3D Phosphorylase Kinase; domain 1 436 535 - -
Glsi05g0493 787 MobiDBLite consensus disorder prediction 332 354 - -
Glsi05g0493 787 CDD STKc_IRAK 466 736 - -
Glsi05g0493 787 Gene3D Transferase(Phosphotransferase) domain 1 536 751 - -
Glsi05g0493 787 ProSitePatterns Protein kinases ATP-binding region signature. 466 488 IPR017441 GO:0005524
Glsi05g0493 787 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 370 768 IPR047117 -
Glsi05g0493 787 SUPERFAMILY Protein kinase-like (PK-like) 438 731 IPR011009 -
Glsi05g0493 787 MobiDBLite consensus disorder prediction 408 439 - -
Glsi05g0493 787 FunFam proline-rich receptor-like protein kinase PERK8 536 747 - -
Glsi05g0493 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0493 Glsi-ChrGlsi05 54938593 54943638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0493 361 675 Trihelix Transcription Factor Family AT1G26150 70.347 2.56e-163 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi05g0493 Pkinase 7.6e-44 CL0016