Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0489 ATGAAGGGTGGAAGAAGAAGGAAGCTGCATTTCAGCAAGATCTACACATTCGCATGTGGTAAGCAATCGTTCCAGGAAGATCACTCACAGATTGGGGGGCGAGGTTTTTCCAGGGTAGTCTTCTGCAACGAACCAGATAGCCTTGAGGCTGGAATTCGGAATTATGCAGATAATTCTGTGCAGTCTACAAAATACACGCTTGCTACTTTCTTGCCCAAATCACTGTTTGAGCAATTTAGGAGGGTGGCTAATTTCTATTTCTTAGTTACTGGCACCTTAGCCTTCACTCCACTAGCTCCTTTCACAGCTGTGAGTGCAATCGTTCCTCTGATTATCGTTATTGGGGCGACCATGGTGAAAGAAGGTATTGAAGATTGGCGTCGGAAGAAGCAGGATATTGAGGTGAACAATAGACGGGTTAAAGTGCATAAACATGATGGTGTATTCGAATATAATGAATGGAAACATCTGAGGGTGGGAGATATAGTGAAGGTAGAAAAGGATGAATTCTTTCCAGCAGACCTCTTATTGCTTTCATCCAGTTATGAGGATGCAATCTGCTATGTCGAGACCATGAACTTGGACGGCGAGACAAATCTAAAGCTGAAGCAAGGGTTGGAGGTAACTTCTTCCTTACACGAGGATCCCAACTTCTGTGATTTTAAGGCTACGGTCAAATGTGAAGACCCAAATGCAAATTTGTACTGTTTTGTTGGGAGCATGGAGTTTGAAGAGCAACAATATCCCCTTTCTCCCCAGCAACTTCTCCTGAGAGACTCTAAACTCCGTAATACGGACTACATATATGGAGCTGTCATCTTCACTGGTCATGACACTAAGGTTATTCAAAATTCTACTGATCCCCCGTCAAAGAGAAGTAAAATTGAGAAGAAGATGGATAGAATCATCTACTTCTTGTTTTGTATTCTATTTCTAATGGCATTTGTTGGGTCTATTTTCTTTGGCATTGCAACTAAAGATGACTTGGAAAATGGGTTGATGAAAAGATGGTATCTAAGACCAGATGATTCTACAATTTTTTTTGATCCAAAAAGAGCGGCATCTGCTGCATTTTTTCATTGTTTGACGGCCTTAATGTTATATAGCTTCTTTATTCCTATTTCCTTGTATGTGTCAATAGAAATTGTCAAAGTCCTTCAGAGTATCTTCATCAATCAAGACATCCATATGTACTATGAGGAAGCAGACAAACCAGCTCATGCCCGAACTTCAAATTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTTTGACCTGCAACTCAATGGAGTTTATAAAATGTTCAGTTGCTGGGGTAGCTTATGGCCGTGGTGTTACAGAGGTCGAGAAGGCAATGGATAGAAGAAATAGTTCACCATTGATTCATGAACAAGTTGATGGATCAGATGACATAAGGGATTCTACTGTTACAAAAGCACCCATCAAAGGTTTTAATTTTATAGATGAAAGGATAATGAATGGGAACTGGATTAATGAGCCTCATGCGGATGTTATTCAGAAGTTTTTTCACTTATTGGCGATCTGTCATACAGCCATACCTGAAGTCGACGAAGACTCAGGAAATATCTCATATGAAGCTGAATCCCCAGATGAAGCAGCATTTGTGATTGCAGCTAGAGAACTTGGCTTTGAATTCTACAAAAGGACTCAGACTAGTTTATCAATGTACGAGTTGGATCCAGTTTCTGGCAAGAAAGTTGAAAGGACATATAAACTTCTCAATGTTTTAGAATTCAATAGTTCAAGGAAGCGAATGTCAGTGATAGTGAAAGATGAAGAAAGAAAAGTTCTGCTATTCTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGCATGGGAGGGAGTTTGAAAGGAAAACCATGGAGCATGTGCATGAATATGCTGATGCAGGTCTGAGGACCTTGATACTGGCCTACCGTGAACTTGATGAAGGAGAATACAGGGAGTTTGTTGAAAAATTTTCTGAGGCCAAGAATTCAGTTAGTGCAGATCGGGAAATACTGATTGATGAAGTATCAGATAAAATTGAGAGGAACCTAATCCTTCTTGGTGCCACTGCTGTAGAGGACAAACTCCAAAATGGGGTTCCTGATAGCATTGACAAACTTGCCCAAGCAGGAATCAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCCATCAATATTGGTTTTGCTTGTAGTTTGCTTAGACAAGGAATGAAGCAGATTATAATTCATCTGGAGAATCCAGATATTCAAGCATTGGAAAAGGCTGGGGAAAAGGCTGCTATTACCAAAGCATCAAGGGAAAGTGTCCACCGTCAGATATCTGAAGGCACTGCACAGCTTACTGCATCCAGAGGGACCTCTCAGCAGGCATTTGCTCTGATCATTGATGGAAAATCACTTGCTTATGCTCTAGAGGATGATATGAAGAACATGTTTCTGGAGCTTGCACGTAATTGTGCATCTGTTATCTGTTGTCGTTCTTCACCAAAGCAGAAGGCACTGGTTACTAGACTTGTTAAATCTGGAACTGGCAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCAGATATAGGGGTTGGAATCAGTGGTGTTGAAGGAATGCAGGCTGTTATGTCTAGCGATATTGCAATTGCCCAGTTCCGATATTTGGAACGATTACTCCTTGTTCACGGACATTGGTGTTACCGGAGGATCTCGTCAATGATATGCTATTTCTTCTACAAGAATGTTACATTTGGATTTACTCTCTTCTTGTACGAGGTGTATGCATCATTCTCTGGACAACCTTCATACAATGACTGGTTTTTGTCCCTCTACAACGTCTTCTTTTCATCACTTCCTGTTATTGCCCTCGGGGTATTTGACCAGGATGTGTCAGCCCGGTACTGTCTTAAGTTTCCTTTGCTATATCAACAAGGAGTACAAAATGTCCTCTTTAGCTGGCGCCGTATACTTAGCTGGATGCTGAATGGATTTATTAGTGCCTTAATAATTTTCTTCTTCTGCACAAAATCAATGGAGCTTCAAGCATTTGATGAGGAGGGAAGAACTGCTGGGAGGGATATACTGGGAGCAACGATGTATACTTGCATCGTATGGGTTGTAAACTTGCAGATGGCACTTGCCATAAGTTACTTCACCTTGATACAACATATTTTCATCTGGGGTACCATTGCATTCTGGTATATTTTCCTCCTGATATATGGATCAATGCCGCCAGGATTTTCTAAGAATGCTTACAAAGTCTTCATCGAAACCCTTGCTCCATCTCCTCTGTATTGGCTTGTAACATTTTTCGTGGTGATCTCAACCCTAATACCATACTTCTCGTACTCGGCGATTCAGATGCGGTTCTTTCCCATGTACCATGAAATGGTACAATGGATAAGGTATGAGGGGAAGACAAATGATCCTGGATATTGCAATATGGTGCGGCAGAGGTCATTGCGGCCAACAACCGTGGGCTCAACAGCACGCTTAGCGGCTAAGTCTAACCACATGAAAGACAGAACTTCTAACCATAGATAA 3594 0.4132 MKGGRRRKLHFSKIYTFACGKQSFQEDHSQIGGRGFSRVVFCNEPDSLEAGIRNYADNSVQSTKYTLATFLPKSLFEQFRRVANFYFLVTGTLAFTPLAPFTAVSAIVPLIIVIGATMVKEGIEDWRRKKQDIEVNNRRVKVHKHDGVFEYNEWKHLRVGDIVKVEKDEFFPADLLLLSSSYEDAICYVETMNLDGETNLKLKQGLEVTSSLHEDPNFCDFKATVKCEDPNANLYCFVGSMEFEEQQYPLSPQQLLLRDSKLRNTDYIYGAVIFTGHDTKVIQNSTDPPSKRSKIEKKMDRIIYFLFCILFLMAFVGSIFFGIATKDDLENGLMKRWYLRPDDSTIFFDPKRAASAAFFHCLTALMLYSFFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGVAYGRGVTEVEKAMDRRNSSPLIHEQVDGSDDIRDSTVTKAPIKGFNFIDERIMNGNWINEPHADVIQKFFHLLAICHTAIPEVDEDSGNISYEAESPDEAAFVIAARELGFEFYKRTQTSLSMYELDPVSGKKVERTYKLLNVLEFNSSRKRMSVIVKDEERKVLLFCKGADSVMFERLAKHGREFERKTMEHVHEYADAGLRTLILAYRELDEGEYREFVEKFSEAKNSVSADREILIDEVSDKIERNLILLGATAVEDKLQNGVPDSIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIHLENPDIQALEKAGEKAAITKASRESVHRQISEGTAQLTASRGTSQQAFALIIDGKSLAYALEDDMKNMFLELARNCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNVTFGFTLFLYEVYASFSGQPSYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCLKFPLLYQQGVQNVLFSWRRILSWMLNGFISALIIFFFCTKSMELQAFDEEGRTAGRDILGATMYTCIVWVVNLQMALAISYFTLIQHIFIWGTIAFWYIFLLIYGSMPPGFSKNAYKVFIETLAPSPLYWLVTFFVVISTLIPYFSYSAIQMRFFPMYHEMVQWIRYEGKTNDPGYCNMVRQRSLRPTTVGSTARLAAKSNHMKDRTSNHR 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0489 1197 NCBIfam phospholipid-translocating P-type ATPase 55 1149 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Glsi05g0489 1197 FunFam Phospholipid-transporting ATPase 699 904 - -
Glsi05g0489 1197 Pfam Cation transport ATPase (P-type) 539 625 - -
Glsi05g0489 1197 Pfam Phospholipid-translocating P-type ATPase C-terminal 892 1142 IPR032630 -
Glsi05g0489 1197 SFLD C1.7: P-type atpase like 406 915 - -
Glsi05g0489 1197 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Glsi05g0489 1197 SFLD p-type atpase 406 915 IPR044492 -
Glsi05g0489 1197 SUPERFAMILY Calcium ATPase, transduction domain A 142 283 IPR008250 -
Glsi05g0489 1197 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 31 1155 - -
Glsi05g0489 1197 NCBIfam HAD-IC family P-type ATPase 834 946 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g0489 1197 Gene3D - 700 904 IPR023214 -
Glsi05g0489 1197 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 490 701 IPR023299 GO:0000166
Glsi05g0489 1197 Gene3D - 542 699 IPR023299 GO:0000166
Glsi05g0489 1197 SUPERFAMILY HAD-like 419 919 IPR036412 -
Glsi05g0489 1197 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Glsi05g0489 1197 Gene3D - 116 286 - -
Glsi05g0489 1197 FunFam Phospholipid-transporting ATPase 541 699 - -
Glsi05g0489 1197 FunFam Phospholipid-transporting ATPase 116 286 - -
Glsi05g0489 1197 CDD P-type_ATPase_APLT_Dnf-like 57 1024 - -
Glsi05g0489 1197 Pfam E1-E2 ATPase 137 327 - -
Glsi05g0489 1197 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1142 IPR023298 -
Glsi05g0489 1197 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Glsi05g0489 1197 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0489 Glsi-ChrGlsi05 54915114 54922135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0489 9 1190 Primary Pumps ATPases AT1G68710 75.970 0.0 1928